4KW5 - JenaLib

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Title :   M. TUBERCULOSIS DPRE1 IN COMPLEX WITH INHIBITOR TCA1

Authors :   S. M. Batt, G. S. Besra, K. Futterer

Date :   23 May 13 (Deposition) - 10 Jul 13 (Release) - 17 Jul 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.61

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Alpha/Beta Fold, Oxidoreductase, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Wang, D. Sambandan, R. Halder, J. Wang, S. M. Batt, B. Weinrick, I. Ahmad, P. Yang, Y. Zhang, J. Kim, M. Hassani, S. Huszar, C. Trefzer, Z. Ma, T. Kaneko, K. E. Mdluli, S. Franzblau, A. K. Chatterjee, K. Johnson, K. Mikusova, G. S. Besra, K. Futterer, W. R. Jacobs, P. G. Schultz
Identification Of A Small Molecule With Activity Against Drug-Resistant And Persistent Tuberculosis.
Proc. Natl. Acad. Sci. Usa V. 110 E2510 2013
PubMed-ID: 23776209 | Reference-DOI: 10.1073/PNAS.1309171110

Molecule 1 - OXIDOREDUCTASE
	Chains	:	A, B
	EC Number	:	1.1.98.3
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	DPRE1
	Gene	:	RV3790, RVBD_3790
	Mutation	:	YES
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	83332
	Strain	:	H37RV

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 8)

No.	Name	Count	Type	Full Name
1	1W6	2	Ligand/Ion	ETHYL ({2-[(1,3-BENZOTHIAZOL-2-YLCARBONYL)AMINO]THIOPHEN-3-YL}CARBONYL)CARBAMATE
2	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	GOL	3	Ligand/Ion	GLYCEROL
4	IMD	1	Ligand/Ion	IMIDAZOLE

Biological Unit 1 (4, 4)

No.	Name	Count	Type	Full Name
1	1W6	1	Ligand/Ion	ETHYL ({2-[(1,3-BENZOTHIAZOL-2-YLCARBONYL)AMINO]THIOPHEN-3-YL}CARBONYL)CARBAMATE
2	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	GOL	1	Ligand/Ion	GLYCEROL
4	IMD	1	Ligand/Ion	IMIDAZOLE

Biological Unit 2 (3, 4)

No.	Name	Count	Type	Full Name
1	1W6	1	Ligand/Ion	ETHYL ({2-[(1,3-BENZOTHIAZOL-2-YLCARBONYL)AMINO]THIOPHEN-3-YL}CARBONYL)CARBAMATE
2	FAD	1	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
3	GOL	2	Ligand/Ion	GLYCEROL
4	IMD	-1	Ligand/Ion	IMIDAZOLE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TRP A:16 , ILE A:52 , ALA A:53 , ARG A:54 , GLY A:55 , LEU A:56 , GLY A:57 , ARG A:58 , SER A:59 , TYR A:60 , ASN A:63 , ALA A:64 , MET A:74 , ALA A:94 , PRO A:116 , GLY A:117 , THR A:118 , VAL A:121 , THR A:122 , GLY A:124 , GLY A:125 , ALA A:128 , CYS A:129 , ILE A:131 , HIS A:132 , ASN A:178 , GLY A:179 , GLY A:182 , ILE A:184 , TYR A:415 , ALA A:417 , 1W6 A:502 , HOH A:611	BINDING SITE FOR RESIDUE FAD A 501
2	AC2	SOFTWARE	TYR A:60 , HIS A:132 , LYS A:134 , SER A:228 , TRP A:230 , TYR A:314 , VAL A:365 , LYS A:367 , LYS A:418 , FAD A:501	BINDING SITE FOR RESIDUE 1W6 A 502
3	AC3	SOFTWARE	HIS A:359 , TYR A:360 , PRO A:391 , LYS A:393 , LEU A:396	BINDING SITE FOR RESIDUE GOL A 503
4	AC4	SOFTWARE	SER A:82 , ASP A:84 , ASP B:84	BINDING SITE FOR RESIDUE IMD A 504
5	AC5	SOFTWARE	TRP B:16 , ILE B:52 , ALA B:53 , ARG B:54 , GLY B:55 , LEU B:56 , GLY B:57 , ARG B:58 , SER B:59 , TYR B:60 , ASN B:63 , ALA B:64 , MET B:74 , ALA B:94 , PRO B:116 , GLY B:117 , THR B:118 , VAL B:121 , THR B:122 , GLY B:124 , GLY B:125 , ALA B:128 , CYS B:129 , ILE B:131 , HIS B:132 , ASN B:178 , GLY B:179 , GLY B:182 , ILE B:184 , TYR B:415 , ALA B:417 , 1W6 B:502	BINDING SITE FOR RESIDUE FAD B 501
6	AC6	SOFTWARE	TYR B:60 , HIS B:132 , LYS B:134 , SER B:228 , TRP B:230 , TYR B:314 , PRO B:316 , CYS B:387 , LYS B:418 , FAD B:501	BINDING SITE FOR RESIDUE 1W6 B 502
7	AC7	SOFTWARE	MET B:102 , ALA B:105 , LEU B:106 , LEU B:110 , TRP B:111 , VAL B:112 , LEU B:115 , MET B:191	BINDING SITE FOR RESIDUE GOL B 503
8	AC8	SOFTWARE	HIS B:137 , HIS B:216 , GLU B:221 , SER B:227 , SER B:228 , ALA B:229 , PHE B:366 , LYS B:367 , LEU B:368	BINDING SITE FOR RESIDUE GOL B 504

(no "SS Bond" information available for 4KW5)

Asymmetric Unit

No.	Residues
1	Pro A:237	-	Pro A:238
2	Pro B:237	-	Pro B:238

(no "SAP(SNP)/Variant" information available for 4KW5)

(no "PROSITE Motif" information available for 4KW5)

(no "Exon" information available for 4KW5)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:426
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee........eeeeeee..hhhhhhhhhhhhhhh.....eeee...............eeee......eeeee....eeeee...hhhhhhhhhh...ee..........hhhhhhhh.....hhhhhhhhhh.eeeeeee.....eeee.....hhhhhhhhh.......eeeeeeee.ee....eeeeeeee..hhhhhhhhh..hhhhhh.eeeeee...........eeeeeeee.hhhhhhhhhhh............hhhhhhhhhhhh.eeeeeeehhhhh...eeeeeeeee..hhhhhhhhhhhhhhh.......eeeee.............eeeeeeeee...hhhhhhhhhhhhhhhh..ee........hhhhhhhhh.hhhhhhhhhhhhh......hhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4kw5 A   7 TTTATRLTGWGRTAPSVANVLRTPDAEMIVKAVARVAESGGGRGAIARGLGRSYGDNAQNGGGLVIDMTPLNTIHSIDADTKLVDIDAGVNLDQLMKAALPFGLWVPVLPGTRQVTVGGAIACDIHGKNHHSAGSFGNHVRSMDLLTADGEIRHLTPTGEDAELFWATVGGNGLTGIIMRATIEMTPTSTAYFIADGDVTASLDETIALHSDGSEARYTYSSAWFDAISAPPKLGRAAVSRGRLATVEQLPAKLRSEPLKFDANKYTFGPIGELWYRKSGTYRGKVQNLTQFYHPGFLQYQFVIPTEAVDEFKKIIGVIQASGHYSFLNVFKLFGPRNQAPLSFPIPGWNICVDFPIKDGLGKFVSELDRRVLEFGGRLYTAKDSRTTAETFHAMYPRVDEWISVRRKVDPLRVFASDMARRLELL 461
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266 ||    291       301       311    || 335       345       355       365       375       385       395       405       415       425       435       445       455      
                                                                                                                                                                                                                                                                                               268|                             316|                                                                                                                                  
                                                                                                                                                                                                                                                                                                284                              331

Chain B from PDB  Type:PROTEIN  Length:415
                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee........eeeeeee..hhhhhhhhhhhhhhh.....eeee...............eeee......eeeee....eeeee...hhhhhhhhhh...ee..........hhhhhhhh.....hhhhhhhhhh.eeeeeee.....eeee.....hhhhhhhhh.......eeeeeeee.ee....eeeeeeee..hhhhhhhhh..hhhhhh.eeeeee...........eeeeeeee.hhhhhhhhhhh......hhhhhhhheeeeeeehhhhh...eeeeeeeee..hhhhhhhhhhhhhhh.......eeeee.............eeeeeeeee...hhhhhhhhhhhhhhhh..ee........hhhhhhhhh.hhhhhhhhhhhhh......hhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kw5 B   7 TTTATRLTGWGRTAPSVANVLRTPDAEMIVKAVARVAESGGGRGAIARGLGRSYGDNAQNGGGLVIDMTPLNTIHSIDADTKLVDIDAGVNLDQLMKAALPFGLWVPVLPGTRQVTVGGAIACDIHGKNHHSAGSFGNHVRSMDLLTADGEIRHLTPTGEDAELFWATVGGNGLTGIIMRATIEMTPTSTAYFIADGDVTASLDETIALHSDGSEARYTYSSAWFDAISAPPKLGRAAVSRGRLATVEQLPAKLRSEPLKFELWYRKSGTYRGKVQNLTQFYHPGFLQYQFVIPTEAVDEFKKIIGVIQASGHYSFLNVFKLFGPRNQAPLSFPIPGWNICVDFPIKDGLGKFVSELDRRVLEFGGRLYTAKDSRTTAETFHAMYPRVDEWISVRRKVDPLRVFASDMARRLELL 461
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266||     302       312   ||  336       346       356       366       376       386       396       406       416       426       436       446       456     
                                                                                                                                                                                                                                                                                              267|                   316|                                                                                                                                  
                                                                                                                                                                                                                                                                                               294                    331

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4KW5)

(no "CATH Domain" information available for 4KW5)

(no "Pfam Domain" information available for 4KW5)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Pro A:237 - Pro A:238	[ RasMol ]
		Pro B:237 - Pro B:238	[ RasMol ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

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