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(-) Description

Title :  CRYSTAL STRUCTURE OF 2-O-ALPHA-GLUCOSYLGLYCEROL PHOSPHORYLASE IN COMPLEX WITH GLUCOSE
 
Authors :  K. K. Touhara, T. Nihira, M. Kitaoka, H. Nakai, S. Fushinobu
Date :  21 May 13  (Deposition) - 21 May 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  (Alpha/Alpha)6 Barrel, Phosphorylase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. K. Touhara, T. Nihira, M. Kitaoka, H. Nakai, S. Fushinobu
Structural Basis For Reversible Phosphorolysis And Hydrolysis Reactions Of 2-O-Alpha-Glucosylglycerol Phosphorylase
J. Biol. Chem. V. 289 18067 2014
PubMed-ID: 24828502  |  Reference-DOI: 10.1074/JBC.M114.573212

(-) Compounds

Molecule 1 - GLYCOSIDE HYDROLASE FAMILY 65 CENTRAL CATALYTIC
    Chains: A, B
    EC Number: 2.4.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3) CODON PLUS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BSEL_2816
    Mutation: YES
    Organism Scientific: BACILLUS SELENITIREDUCENS
    Organism Taxid: 439292
    Strain: MLS10
    Synonym: 2-O-ALPHA-GLUCOSYLGLYCEROL PHOSPHORYLASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 6)

Asymmetric/Biological Unit (4, 6)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2BGC2Ligand/IonBETA-D-GLUCOSE
3CA2Ligand/IonCALCIUM ION
4PG41Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:327 , PHE A:332 , TRP A:333 , ASP A:334 , GLU A:475 , LYS A:587 , GLN A:588 , SER A:622 , LEU A:624 , HOH A:993 , HOH A:1282BINDING SITE FOR RESIDUE BGC A 801
2AC2SOFTWARELYS A:65 , GLY A:68 , LYS A:69 , ARG A:371 , GLU A:389 , LEU A:390 , CYS A:391 , HOH A:1189BINDING SITE FOR RESIDUE 1PE A 802
3AC3SOFTWAREALA B:319 , PHE B:332 , TRP B:333 , ASP B:334 , GLU B:475 , LYS B:587 , GLN B:588 , SER B:622 , LEU B:624 , HOH B:925 , HOH B:961BINDING SITE FOR RESIDUE BGC B 801
4AC4SOFTWARELYS B:65 , GLY B:68 , LYS B:69 , ARG B:371 , GLU B:389 , CYS B:391 , HOH B:1298BINDING SITE FOR RESIDUE PG4 B 802
5AC5SOFTWAREGLN B:264 , GLU B:268 , HOH B:1286 , HOH B:1302 , HOH B:1307BINDING SITE FOR RESIDUE CA B 803
6AC6SOFTWAREGLU B:608 , GLU B:612 , HOH B:1308 , HOH B:1309BINDING SITE FOR RESIDUE CA B 804

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KTP)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ile A:557 -Pro A:558
2Tyr A:575 -Pro A:576
3Ile B:557 -Pro B:558
4Tyr B:575 -Pro B:576

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KTP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KTP)

(-) Exons   (0, 0)

(no "Exon" information available for 4KTP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:767
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..ee.....eeee...hhhhhhhhhhhh.ee...eee.......hhhhh..eee..................eeeeeeeee..ee........eeeeeee....eeeeeeeee.....eeeeeeeeee......eeeeeeeeee...eeeeeeeeee..........eeeeeeeee..eeeeeeee.....eeeeeeeeee......eeeee..eeeeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.eee.hhhhhhhhhhhhhhhhhhh...............hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......................ee......ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeehhhheee................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh...............hhhhh....hhhhhhhhh.......................hhhhhhhhh....hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhh.........ee..ee....hhhhhhhhhhhhhh.....eee..eeee.........eeeeeeee..eeeeeeee..eeeeee.......eeeee..eeeee...eeeee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ktp A   1 MHEIGEHLTTNTGWDIIKNRYEAAQAITEGSNFMIGNGFMGYRGTFAEDGKDAYAACIVTDTWDKADGKWEELSTVPNALLTLLHVDGEPFIMSEEAASFERTLDLSQGVTSRKVSQRMKNGATITIHEEKFASYRKKHAVLMKYTVESDQDTDAVLDTGIDYDVWSINGDHLQGHHYFSHPTGDGVTAKTVSYEDTVTVVETCSLDADASEEDYQNPDGSGRTFPLSLEAGKPVTLEKAMIIYSSNDVDNPQDEALLEAKHMQSYEEEKAANRLEWDNLWSHYDVTIQNNIIDQVALRFNIYHAIIATPVHKSLPIGARGLSCQAYQGAAFWDQEIYNMPMYLYSNPEIARNILKYRHRTLDGARRKAKRLGYEGAYYAWISGKTGDELCPDFFFKDVLSGRDIRNHFNDWQIHISPDIAYAVKKYHQVTGDDAFIRDYGAEMIFEIARFLASHAVYKPMRGRYEFMRVQGPDEYHENVDNNAFTNHQAMFTLQAADELLQTLDEKTLSAVKEKIGLSDDEISLWRDMLANTYVPKPDKHGIIEQFDGYYDLETIIPAKKVTERLIKEDEYYGYPNGVTVRTQCIKQADVIQLFVLHPHLYDRKTVELNYEFYEPRTLHFSSLSPSSYAIVAAQIDKVEEAYRNFRKSVMIDLLNTNEAVSGGTFIGGIHTAANGASWQMVVNGFGGLSVHGDDIHLSPRLPDAWDGYTFKAIVKGQTLEVDVTKEQITITNKSEDRKPLTLHIFGEKSVLDSERITKSRLEHHHH 767
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       


Chain B from PDB  Type:PROTEIN  Length:761
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..ee.....eeee........hhhhhhh.ee...eee.......hhhhh..eeeeeeee.......eeee......eeeee..ee........eeeeeee....eeeeeeeee.....eeeeeeeeee......eeeeeeeeee...eeeeeeeeee..........eeeeeeeee..eeeeeeee.....eeeeeeeeee......eeeee..eeeeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.eee.hhhhhhhhhhhhhhhhhh................hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......................ee......ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheee....eee...ee......eee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh...............hhhhh....hhhhhhhhh.......................hhhhhhhhh....hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhh.........ee..ee....hhhhhhhhhhhhhh.....ee....ee..........eeeeeeee..eeeeeeee..eeeeeee.......................eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ktp B   1 MHEIGEHLTTNTGWDIIKNRYEAAQAITEGSNFMIGNGFMGYRGTFAEDGKDAYAACIVTDTWDKADGKWEELSTVPNALLTLLHVDGEPFIMSEEAASFERTLDLSQGVTSRKVSQRMKNGATITIHEEKFASYRKKHAVLMKYTVESDQDTDAVLDTGIDYDVWSINGDHLQGHHYFSHPTGDGVTAKTVSYEDTVTVVETCSLDADASEEDYQNPDGSGRTFPLSLEAGKPVTLEKAMIIYSSNDVDNPQDEALLEAKHMQSYEEEKAANRLEWDNLWSHYDVTIQNNIIDQVALRFNIYHAIIATPVHKSLPIGARGLSCQAYQGAAFWDQEIYNMPMYLYSNPEIARNILKYRHRTLDGARRKAKRLGYEGAYYAWISGKTGDELCPDFFFKDVLSGRDIRNHFNDWQIHISPDIAYAVKKYHQVTGDDAFIRDYGAEMIFEIARFLASHAVYKPMRGRYEFMRVQGPDEYHENVDNNAFTNHQAMFTLQAADELLQTLDEKTLSAVKEKIGLSDDEISLWRDMLANTYVPKPDKHGIIEQFDGYYDLETIIPAKKVTERLIKEDEYYGYPNGVTVRTQCIKQADVIQLFVLHPHLYDRKTVELNYEFYEPRTLHFSSLSPSSYAIVAAQIDKVEEAYRNFRKSVMIDLLNTNEAVSGGTFIGGIHTAANGASWQMVVNGFGGLSVHGDDIHLSPRLPDAWDGYTFKAIVKGQTLEVDVTKEQITITNKSEDRKPLTLHIFGEKSVLDSERITKSR 761
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KTP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KTP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KTP)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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    Tyr B:575 - Pro B:576   [ RasMol ]  
 

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4ktr