4KM7 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   HUMAN FOLATE RECEPTOR ALPHA (FOLR1) AT ACIDIC PH, TRICLINIC FORM

Authors :   A. R. Kovach, A. S. Wibowo, C. E. Dann Iii

Date :   08 May 13 (Deposition) - 07 Aug 13 (Release) - 02 Oct 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Folate Receptor Alpha, Folr1, Folate Receptor, Folic Acid, Folates, 5-Methyltetrahydrofolate, Antifolates, Folate-Conjugates, Gpi- Anchored Protein On Eukaryotic Membrane, Transport Protein, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. S. Wibowo, M. Singh, K. M. Reeder, J. J. Carter, A. R. Kovach, W. Meng, M. Ratnam, F. Zhang, C. E. Dann
Structures Of Human Folate Receptors Reveal Biological Trafficking States And Diversity In Folate And Antifolate Recognition.
Proc. Natl. Acad. Sci. Usa V. 110 15180 2013
PubMed-ID: 23934049 | Reference-DOI: 10.1073/PNAS.1308827110

Molecule 1 - FOLATE RECEPTOR ALPHA
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Cell Line	:	SF9
	Expression System Common	:	FALL ARMYWORM
	Expression System Plasmid	:	PFASTBAC
	Expression System Taxid	:	7108
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 28-234
	Gene	:	FOLR1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	FR-ALPHA, ADULT FOLATE-BINDING PROTEIN, FBP, FOLATE RECEPTOR 1, FOLATE RECEPTOR, ADULT, KB CELLS FBP, OVARIAN TUMOR-ASSOCIATED ANTIGEN MOV18

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 6)

No.	Name	Count	Type	Full Name
1	K	2	Ligand/Ion	POTASSIUM ION
2	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	K	-1	Ligand/Ion	POTASSIUM ION
2	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	K	-1	Ligand/Ion	POTASSIUM ION
2	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TRP A:60 , SER A:110 , ASN A:112 , ASN A:220 , ASN A:222	BINDING SITE FOR RESIDUE K A 301
2	AC2	SOFTWARE	ASN A:161 , ALA A:170 , VAL A:171 , HOH A:502 , HOH A:541	BINDING SITE FOR RESIDUE NAG A 302
3	AC3	SOFTWARE	ASN A:201 , TYR A:202	BINDING SITE FOR RESIDUE NAG A 303
4	AC4	SOFTWARE	TRP B:60 , SER B:110 , ASN B:112 , ASN B:220 , ASN B:222	BINDING SITE FOR RESIDUE K B 301
5	AC5	SOFTWARE	ASN B:161 , THR B:163 , ALA B:170 , VAL B:171 , HOH B:541	BINDING SITE FOR RESIDUE NAG B 302
6	AC6	SOFTWARE	ASN B:201 , TYR B:202	BINDING SITE FOR RESIDUE NAG B 303

Asymmetric Unit

No.	Residues
1	A:37	-	A:65
2	A:57	-	A:105
3	A:66	-	A:109
4	A:89	-	A:175
5	A:96	-	A:146
6	A:135	-	A:209
7	A:139	-	A:189
8	A:152	-	A:169
9	B:37	-	B:65
10	B:57	-	B:105
11	B:66	-	B:109
12	B:89	-	B:175
13	B:96	-	B:146
14	B:135	-	B:209
15	B:139	-	B:189
16	B:152	-	B:169

(no "Cis Peptide Bond" information available for 4KM7)

(no "SAP(SNP)/Variant" information available for 4KM7)

(no "PROSITE Motif" information available for 4KM7)

(no "Exon" information available for 4KM7)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:194
                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee.....ee.....hhhhh.hhhhh......................hhhhhhhhhhhhhhhhhh..hhhhh.................hhhhhhhhhhhh...ee........................eehhhhh.hhhhhhhhh......................hhhhh.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4km7 A  31 TELLNVCMNAKHHKEKPGPEDKLHEQCRPWRKNACCSDVSYLYRFNWNHCGEMAPACKRHFIQDTCLYECSPNLGPWIQQVDQSWRKERVLNVPLCKEDCEQWWEDCRTSYTCKSNWHKGWNWTSGFNKCAVGAACQPFHFYFPTPTVLCNEIWTHSYKVSNYSRGSGRCIQMWFDPAQGNPNEEVARFYAAAM 233
                                    40        50        60      ||79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229    
                                                               67|                                                                                                                                                            
                                                                77

Chain B from PDB  Type:PROTEIN  Length:192
                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....ee.....ee.....hhhhh.hhhhh......................hhhhhhhhhhhhhhhhhh..hhhhh.................hhhhhhhhhhhh...ee........................eehhhhh.hhhhhhhhh......................hhhhh.hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4km7 B  32 ELLNVCMNAKHHKEKPGPEDKLHEQCRPWRKNACCSDVSYLYRFNWNHCGEMAPACKRHFIQDTCLYECSPNLGPWIQQVDQSWRKERVLNVPLCKEDCEQWWEDCRTSYTCKSNWHKGWNWTSGFNKCAVGAACQPFHFYFPTPTVLCNEIWTHSYKVSNYSRGSGRCIQMWFDPAQGNPNEEVARFYAAA 232
                                    41        51        61     || 80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230  
                                                              67|                                                                                                                                                           
                                                               77

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4KM7)

(no "CATH Domain" information available for 4KM7)

(no "Pfam Domain" information available for 4KM7)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		K	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NAG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4km7)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	4km7
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	FOLR1_HUMAN \| P15328
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	FOLR1_HUMAN \| P15328
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	FOLR1_HUMAN \| P15328	:	4km6 4kmx 4lrh 5izq

4km6	HUMAN FOLATE RECEPTOR ALPHA (FOLR1) AT ACIDIC PH, ORTHORHOMBIC FORM
4kmx	HUMAN FOLATE RECEPTOR ALPHA (FOLR1) AT ACIDIC PH
4kmy	HUMAN FOLATE RECEPTOR BETA (FOLR2) AT NEUTRAL PH
4kmz	HUMAN FOLATE RECEPTOR BETA (FOLR2) IN COMPLEX WITH FOLATE
4kn0	HUMAN FOLATE RECEPTOR BETA (FOLR2) IN COMPLEX WITH THE ANTIFOLATE METHOTREXATE
4kn1	HUMAN FOLATE RECEPTOR BETA (FOLR2) IN COMPLEX WITH THE ANTIFOLATE AMINOPTERIN
4kn2	HUMAN FOLATE RECEPTOR BETA (FOLR2) IN COMPLEX WITH ANTIFOLATE PEMETREXED

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (6, 6)

SS Bonds (16, 16)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (43, 43)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File