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(-) Description

Title :  HUMAN IKB KINASE BETA
 
Authors :  S. Liu, L. Mosyak
Date :  02 May 13  (Deposition) - 26 Jun 13  (Release) - 28 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.83
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Kinase, Nkb Signaling, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Liu, Y. R. Misquitta, A. Olland, M. A. Johnson, K. S. Kelleher, R. Kriz, L. L. Lin, M. Stahl, L. Mosyak
Crystal Structure Of A Human I Kappa B Kinase Beta Asymmetric Dimer.
J. Biol. Chem. V. 288 22758 2013
PubMed-ID: 23792959  |  Reference-DOI: 10.1074/JBC.M113.482596

(-) Compounds

Molecule 1 - INHIBITOR OF NUCLEAR FACTOR KAPPA-B KINASE SUBUNIT BETA
    Chains: A
    EC Number: 2.7.11.10
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Gene: IKBKB, IKKB
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: I-KAPPA-B-KINASE BETA, IKK-B, IKK-BETA, IKBKB, I-KAPPA-B KINASE 2, IKK2, NUCLEAR FACTOR NF-KAPPA-B INHIBITOR KINASE BETA, NFKBIKB
 
Molecule 2 - INHIBITOR OF NUCLEAR FACTOR KAPPA-B KINASE SUBUNIT BETA
    Chains: B
    EC Number: 2.7.11.10
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Gene: IKBKB, IKKB
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: I-KAPPA-B-KINASE BETA, IKK-B, IKK-BETA, IKBKB, I-KAPPA-B KINASE 2, IKK2, NUCLEAR FACTOR NF-KAPPA-B INHIBITOR KINASE BETA, NFKBIKB

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1KSA2Ligand/IonK-252A
2SEP3Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:21 , GLY A:22 , THR A:23 , VAL A:29 , ALA A:42 , MET A:96 , GLU A:97 , TYR A:98 , CYS A:99 , GLY A:102 , GLU A:149 , ILE A:165BINDING SITE FOR RESIDUE KSA A 800
2AC2SOFTWARELEU B:21 , GLY B:22 , VAL B:29 , ALA B:42 , LYS B:44 , MET B:96 , GLU B:97 , TYR B:98 , CYS B:99 , GLY B:102 , GLU B:149 , ASN B:150 , ILE B:165 , ASP B:166BINDING SITE FOR RESIDUE KSA B 700

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KIK)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Tyr A:261 -Pro A:262
2Tyr B:261 -Pro B:262

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KIK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KIK)

(-) Exons   (0, 0)

(no "Exon" information available for 4KIK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:619
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..eeeeeeee...eeeeee.....eeeee......hhhhhhhhhhhhhhhhhh.....................eeee....eehhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.......hhh.eeeee....eeeee......hhhhhh...hhhhhhh....hhhhhhhhhhhhhhhhhh........hhhhhhhhhh.......eeee.....eeee.........hhhhhhhhhhhhhhhh................hhhhhhhhhhh.eeeeeee....eeeeeee....hhhhhhhhhhhhhh.hhhhh.eee..........hhhhhh...........eeee..............hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kik A   9 TQTCGAWEMKERLGTGNVIRWHNQETGEQIAIKQCRQELSPRNRERWCLEIQIMRRLTHPNVVAARDVPEGMQNDLPLLAMEYCQGGDLRKYLNQFENCCGLREGAILTLLSDIASALRYLHENRIIHRDLKPENIVLQQGEQRLIHKIIDLGYTSFVGTLQYLAPELLEQQKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHSKVRQKSEVDIVVSEDLNGTVKFSsSLPYPNNLNSVLAERLEKWLQLMLMWHPRQRGTDPTYGPNGCFKALDDILNLKLVHILNMVTGTIHTYPVTEDESLQSLKARIQQDTGIPEEDQELLQEAGLALIPDKPATQCISLNEGHTLDMDLVFLFDNSKITYETQRPQPESVSCILQEPKRNLAFFQLRKVWGQVWHSIQTLKEDCNRLQQGQRAAMMNLLRNNSCLSKMKNSMASMSQQLKAKLDFFKTSIQIDLEKYSEQTDKLLLAWREMEQAVELCGRENEVKLLVERMMALQTDIVDLQRSGTLDDLEEQARELYRRLREKPRDQRTEGDSQEMVRLLLQAIQSFEKKVRVIYTQLSKTVVCKQKALELLPKVEEVVSLMNEDEKTVVRLQEKRQKELWNLLKIACS 663
                                    18    ||  31        41        51        61        71        81  ||    95       105       115       125       135       145       155       165   ||  185       195       205       215       225       235       245       255 |     265       275       285       295       305       315       325       335       345       355       365      |378       388       398 ||    411       421       431       441       451       461       471       481       491       501|      517       527       537       547  ||   564       574       584       594       604       614       624       634       644       654         
                                         23|                                                       84|                                                                             169|                                                                          257-SEP                                                                                                            372|                     400|                                                                                              501|                                       550|                                                                                                         
                                          27                                                        89                                                                              180                                                                                                                                                                                              376                      404                                                                                               508                                        558                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:650
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........ee..eeeeee........eeeeee.....eeeee......hhhhhhhhhhhhhhhhhh.......ee.....hhhhh......eeee....eehhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee....eeeee......ee.........hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh........hhhhhhhhhh.......eeee.....eeee.........hhhhhhhhhhhhhhhh................hhhhhhhhhhhheeeeeee....eeeeeee....hhhhhhhhhhhhhh.hhh.eeeee..........hhhhhh...........eeeeee...............hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kik B   1 HSWSPSLTTQTCGAWEMKERLGTGGFGNVIRWHNQETGEQIAIKQCRQELSPRNRERWCLEIQIMRRLTHPNVVAARDVPEGMQNLAPNDLPLLAMEYCQGGDLRKYLNQFENCCGLREGAILTLLSDIASALRYLHENRIIHRDLKPENIVLQQGEQRLIHKIIDLGYAKELsLCTsFVGTLQYLAPELLEQQKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHSKVRQKSEVDIVVSEDLNGTVKFSSSLPYPNNLNSVLAERLEKWLQLMLMWHPRQRGTDPTYGPNGCFKALDDILNLKLVHILNMVTGTIHTYPVTEDESLQSLKARIQQDTGIPEEDQELLQEAGLALIPDKPATQCISLNEGHTLDMDLVFLFDNSKITYETQISPRPQPESVSCILQEPKRNLAFFQLRKVWGQVWHSIQTLKEDCNRLQQGQRAAMMNLLRNNSCLSKMKNSMASMSQQLKAKLDFFKTSIQIDLEKYSEQTEFGITSDKLLLAWREMEQAVELCGRENEVKLLVERMMALQTDIVDLQRSGTLDDLEEQARELYRRLREKPRDQRTEGDSQEMVRLLLQAIQSFEKKVRVIYTQLSKTVVCKQKALELLPKVEEVVSLMNEDEKTVVRLQEKRQKELWNLLKIACS 663
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  ||   183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546   ||  563       573       583       593       603       613       623       633       643       653       663
                                                                                                                                                                                                      173|   |                                                                                                                                                                                            372|                                                                                                                                                                           550|                                                                                                         
                                                                                                                                                                                                       177-SEP                                                                                                                                                                                             376                                                                                                                                                                            558                                                                                                         
                                                                                                                                                                                                           181-SEP
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KIK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KIK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KIK)

(-) Gene Ontology  (59, 59)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IKKB_HUMAN | O14920: 3brt 3brv 4e3c

(-) Related Entries Specified in the PDB File

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