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(-) Description

Title :  THE STRUCTURE OF A GLYCOSIDE HYDROLASE FAMILY 81 ENDO-[BETA]-1,3-GLUCANASE
 
Authors :  Z. Q. Jiang, P. Zhou, Z. Z. Chen, Q. J. Yan, S. Q. Yang, R. Hilgenfeld
Date :  10 Apr 13  (Deposition) - 02 Oct 13  (Release) - 02 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Glucoside Hydrolases Family 81, Endo-Beta-1, 3-Glucanase, Rhzmucor Miehei, Supersandwich, Beta-1, 3-Glucanase, Extracellular, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Zhou, Z. Z. Chen, Q. J. Yan, S. Q. Yang, R. Hilgenfeld, Z. Q. Jiang
The Structure Of A Glycoside Hydrolase Family 81 Endo-[Beta]-1, 3-Glucanase
Acta Crystallogr. , Sect. D V. 69 2027 2013
PubMed-ID: 18802694  |  Reference-DOI: 10.1107/S090744491301799X

(-) Compounds

Molecule 1 - GLYCOSIDE HYDROLASE FAMILY 81 ENDO-BETA-1,3-GLUCANASE
    Chains: A, B
    EC Number: 3.2.1.39
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RHIZOMUCOR MIEHEI
    Organism Scientific: RHIZOMUCOR MIEHEI
    Organism Taxid: 4839
    Strain: CAU432

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 31)

Asymmetric Unit (3, 31)
No.NameCountTypeFull Name
1MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
2MSE26Mod. Amino AcidSELENOMETHIONINE
3TRS4Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (2, 15)
No.NameCountTypeFull Name
1MPD-1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
2MSE13Mod. Amino AcidSELENOMETHIONINE
3TRS2Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 2 (3, 16)
No.NameCountTypeFull Name
1MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
2MSE13Mod. Amino AcidSELENOMETHIONINE
3TRS2Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 3 (3, 31)
No.NameCountTypeFull Name
1MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
2MSE26Mod. Amino AcidSELENOMETHIONINE
3TRS4Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:386 , PHE A:468 , ASP A:475 , TYR A:478 , HIS A:479 , GLU A:557 , HOH A:1091 , HOH A:1454BINDING SITE FOR RESIDUE TRS A 801
2AC2SOFTWAREASP A:98 , GLU A:634 , THR A:672 , HOH A:1081 , HOH A:1094BINDING SITE FOR RESIDUE TRS A 802
3AC3SOFTWARETYR B:386 , PHE B:468 , ASP B:475 , TYR B:478 , HIS B:479 , GLU B:557 , TYR B:628 , HOH B:954 , HOH B:1398BINDING SITE FOR RESIDUE TRS B 801
4AC4SOFTWAREGLU B:634 , THR B:672 , HOH B:1119 , HOH B:1180BINDING SITE FOR RESIDUE TRS B 802
5AC5SOFTWAREILE A:687 , PRO A:719 , PRO B:655 , ILE B:687 , HIS B:720 , HOH B:1524BINDING SITE FOR RESIDUE MPD B 803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4K35)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Asp A:64 -Pro A:65
2Asp A:210 -Pro A:211
3Leu A:642 -Pro A:643
4Asp B:64 -Pro B:65
5Asp B:210 -Pro B:211
6Leu B:642 -Pro B:643

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4K35)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4K35)

(-) Exons   (0, 0)

(no "Exon" information available for 4K35)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:720
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhh..ee......................hhhhhh.hhhhh.ee.....eeee.........eeee.....eee..............eee......eeeee.hhh....eeeeeeee..eeeeeeee..eeeeeeeeeee.....eeeeeeee.eeee....eeeeee..........eeee.eeeeee......eeeeee.....eeeeeee..eeee...eeeeeeeee..hhhhhhhhhhh....eeeeeeeeee.....eeeeeeeee.......eeeehhhhhhhh.....eeeeeeee.....eeeeee..eeeeee...............hhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh......eeee....eeee....hhhhh.....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.............ee....ee..............ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhh.....eee..eee.......hhhhhhhhhhh..hhhhhhh..hhhhhhhhhhhh...hhhhh..hhhhhhhhhhh..hhhhhhhhhh........hhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4k35 A   5 GDDLFVPVSNFDPKSIFPEIKHPFEPmYANTENGKIVPTNSWISNLFYPSADNLAPTTPDPYTLRLLDGYGGNPGLTIRQPSAKVLGSYPPTNDVPYTDAGYmINSVVVDLRLTSSEWSDVVPDRQVTDWDHLSANLRLSTPQDSNSYIDFPIVRGmAYITANYNNLTPQFLSQHAIISVEADEKKSDDNTSTFSGRKFKITmNDDPTSTFIIYSLGDKPLELRKQDNSNLVASKPYTGVIRVAKLPAPEFETLLDASRAVWPTGGDISARSDDNNGASYTIKWKTNSNEAPLLTYAYAHHLTSIDDSNVKRTDmTLQSATKGPmTALVGNEWTLRETELSPVEWLPLQAAPNPTTINEImTEINKDIASNYTQETAKEDNYFSGKGLQKFAmLALILNKSDQTQLRNPELAQIALDKLKAAFLPYLQNEQADPFRYDTLYKGIVAKAGLPTSmGGTDDLSAEFGHSYYSDHHYHQGYFVVTAAIIHHLDPTWNADRLKAWTEALIRDVNNANDGDEYFAAFRNWDWFAGHSWAGGIKPDGALDGRDQESVPESVNFYWGAKLWGLATGNTPLTKLASLQLAVTKRTTYEYFWmLDGNKNRPENIVRNKVIGIYFEQKTDYTTYFGRFLEYIHGIQQLPmTPELmEYIRTPEFVSQEWDEKLGAIAPTVQSPWAGVLYLNYAIINPAEAYPALRKVQmDDGQTRSYSLYLTATRPHFFRR 724
                                    14        24      | 34        44        54        64        74        84        94       104  |    114       124       134       144       154      |164       174       184       194       204  |    214       224       234       244       254       264       274       284       294       304       314    |  324    |  334       344       354       364|      374       384       394  |    404       414       424       434       444       454   |   464       474       484       494       504       514       524       534       544       554       564       574       584       594   |   604       614       624       634       644    |  654       664       674       684       694       704       714       724
                                                     31-MSE                                                                     107-MSE                                               161-MSE                                       207-MSE                                                                                                         319-MSE   329-MSE                             365-MSE                         397-MSE                                                      458-MSE                                                                                                                                     598-MSE                                       644-MSE|                                                  702-MSE                  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              649-MSE                                                                       


Chain B from PDB  Type:PROTEIN  Length:713
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh..ee......................hhhhhh.hhhhh.ee.....eeee.........eeee.....eee.......eee......eeeee.hhh....eeeeeeee..eeeeeeee..eeeeeeeeeee.....eeeeeeee.eeee....eeeeee..........eeee.eeeeee......eeeeee.....eeeeeee..eeee...eeeeeeeee..hhhhhhhhhhh....eeeeeeeeee.....eeeeeeeee.......eeeehhhhhhhhhhhhheeeeeeee.....eeeeee..eeeeee...............hhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh......eeee....eeee....hhhhh.....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.............ee....ee..............ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhh.....eee..eee.......hhhhhhhhhhh..hhhhhhh..hhhhhhhhhhhh...hhhhh..hhhhhhhhhhh..hhhhhhhhhh........hhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k35 B   5 GDDLFVPVSNFDPKSIFPEIKHPFEPmYANTENGKIVPTNSWISNLFYPSADNLAPTTPDPYTLRLLDGYGGNPGLTIRQPSAKVLGSYPPTAGYmINSVVVDLRLTSSEWSDVVPDRQVTDWDHLSANLRLSTPQDSNSYIDFPIVRGmAYITANYNNLTPQFLSQHAIISVEADEKKSDDNTSTFSGRKFKITmNDDPTSTFIIYSLGDKPLELRKQDNSNLVASKPYTGVIRVAKLPAPEFETLLDASRAVWPTGGDISARSDDNNGASYTIKWKTNSNEAPLLTYAYAHHLTSIDDSNVKRTDmTLQSATKGPmTALVGNEWTLRETELSPVEWLPLQAAPNPTTINEImTEINKDIASNYTQETAKEDNYFSGKGLQKFAmLALILNKSDQTQLRNPELAQIALDKLKAAFLPYLQNEQADPFRYDTLYKGIVAKAGLPTSmGGTDDLSAEFGHSYYSDHHYHQGYFVVTAAIIHHLDPTWNADRLKAWTEALIRDVNNANDGDEYFAAFRNWDWFAGHSWAGGIKPDGALDGRDQESVPESVNFYWGAKLWGLATGNTPLTKLASLQLAVTKRTTYEYFWmLDGNKNRPENIVRNKVIGIYFEQKTDYTTYFGRFLEYIHGIQQLPmTPELmEYIRTPEFVSQEWDEKLGAIAPTVQSPWAGVLYLNYAIINPAEAYPALRKVQmDDGQTRSYSLYLTATRPHFFRR 724
                                    14        24      | 34        44        54        64        74        84        94 ||  | 111       121       131       141       151       161       171       181       191       201     | 211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361   |   371       381       391     | 401       411       421       431       441       451      |461       471       481       491       501       511       521       531       541       551       561       571       581       591      |601       611       621       631       641  |    651       661       671       681       691       701|      711       721   
                                                     31-MSE                                                           96|  |                                                   161-MSE                                       207-MSE                                                                                                         319-MSE   329-MSE                             365-MSE                         397-MSE                                                      458-MSE                                                                                                                                     598-MSE                                       644-MSE|                                                  702-MSE                  
                                                                                                                      104  |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           649-MSE                                                                       
                                                                                                                         107-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4K35)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4K35)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4K35)

(-) Gene Ontology  (2, 2)

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4k3a