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(-) Description

Title :  CRYSTAL STRUCTURE OF BURKHOLDERIA PSEUDOMALLEI DSBA
 
Authors :  R. M. Mcmahon
Date :  09 Apr 13  (Deposition) - 14 Aug 13  (Release) - 12 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Thioredoxin Fold, Disulfide Oxidoreductase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. M. Ireland, R. M. Mcmahon, L. E. Marshall, M. Halili, E. Furlong, S. Tay, J. L. Martin, M. Sarkar-Tyson
Disarming Burkholderia Pseudomallei: Structural And Functional Characterization Of A Disulfide Oxidoreductase (Dsba) Required For Virulence In Vivo.
Antioxid Redox Signal V. 20 606 2014
PubMed-ID: 23901809  |  Reference-DOI: 10.1089/ARS.2013.5375

(-) Compounds

Molecule 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22
    Expression System Strain: BL21 (DE3) PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: BURKHOLDERIA PSEUDOMALLEI
    Organism Taxid: 272560
    Strain: K96243

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:50 , GLU A:54 , ARG A:68 , GLU A:94 , THR A:97 , HOH A:377 , HOH A:413BINDING SITE FOR RESIDUE GOL A 201
2AC2SOFTWAREPRO A:23 , PRO A:25 , GLN A:124 , HOH A:380BINDING SITE FOR RESIDUE GOL A 202
3AC3SOFTWARESER A:9 , ASP A:16 , GLN A:183BINDING SITE FOR RESIDUE GOL A 203

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:43 -A:46

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Val A:159 -Pro A:160

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4K2D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4K2D)

(-) Exons   (0, 0)

(no "Exon" information available for 4K2D)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:191
                                                                                                                                                                                                                               
               SCOP domains d4k2da_ A: automated matches                                                                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........ee.............eeeeeee...hhhhhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee...eeehhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k2d A   7 SPSAPVAGKDFEVMKSPQPVSAPAGKVEVIEFFWYGCPHCYEFEPTIEAWVKKQGDKIAFKRVPVAFRDDFVPHSKLFYALAALGVSEKVTPAVFNAIHKEKNYLLTPQAQADFLATQGVDKKKFLDAYNSFSVQGQVKQSAELLKNYNIDGVPTIVVQGKYKTGPAYTNSLEGTAQVLDFLVKQVQDKKL 197
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4K2D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4K2D)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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