4K1H - JenaLib

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Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   INDUCED OPENING OF INFLUENZA VIRUS NEURAMINIDASE N2 150-LOOP SUGGESTS AN IMPORTANT ROLE IN INHIBITOR BINDING

Authors :   Y. Wu, F. Gao, J. X. Qi, G. F. Gao

Date :   05 Apr 13 (Deposition) - 05 Jun 13 (Release) - 05 Jun 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)

Keywords :   Beta-Propeller, Glycoside Hydrolase Enzymes, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Wu, G. Qin, F. Gao, Y. Liu, C. J. Vavricka, J. Qi, H. Jiang, K. Yu, G. F. Gao
Induced Opening Of Influenza Virus Neuraminidase N2 150-Loo Suggests An Important Role In Inhibitor Binding
Sci Rep V. 3 1551 2013
PubMed-ID: 23531861 | Reference-DOI: 10.1038/SREP01551

Molecule 1 - NEURAMINIDASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	UNP RESIDUES 82-469
	Organism Scientific	:	INFLUENZA A VIRUS
	Organism Taxid	:	382827
	Strain	:	A/RI/5+/1957(H2N2)

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 16)

No.	Name	Count	Type	Full Name
1	BMA	2	Ligand/Ion	BETA-D-MANNOSE
2	CA	2	Ligand/Ion	CALCIUM ION
3	MAN	4	Ligand/Ion	ALPHA-D-MANNOSE
4	NAG	8	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 1 (3, 28)

No.	Name	Count	Type	Full Name
1	BMA	4	Ligand/Ion	BETA-D-MANNOSE
2	CA	-1	Ligand/Ion	CALCIUM ION
3	MAN	8	Ligand/Ion	ALPHA-D-MANNOSE
4	NAG	16	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:293 , GLY A:297 , ASP A:324 , GLY A:345 , GLN A:347 , HOH A:614	BINDING SITE FOR RESIDUE CA A 501
2	AC2	SOFTWARE	ASP B:293 , GLY B:297 , ASP B:324 , GLY B:345 , GLN B:347 , HOH B:602	BINDING SITE FOR RESIDUE CA B 501
3	AC3	SOFTWARE	ASN A:146 , TRP A:437 , ILE A:469 , HOH A:710 , HOH A:856 , HOH A:961 , HOH A:990	BINDING SITE FOR LINKED RESIDUES A 502 to 503
4	AC4	SOFTWARE	ASN A:200 , HOH A:678 , HOH A:729 , HOH A:756 , HOH A:767 , HOH A:807 , HOH A:847 , HOH A:861 , HOH A:957 , HOH A:963 , GLN B:391 , VAL B:392 , ASN B:393 , ARG B:394 , TYR B:453 , GLY B:454 , THR B:455 , HOH B:610 , HOH B:619 , HOH B:633 , HOH B:705	BINDING SITE FOR LINKED RESIDUES A 504 to 508
5	AC5	SOFTWARE	ASN B:146 , TRP B:437 , ILE B:469 , HOH B:804 , HOH B:971	BINDING SITE FOR LINKED RESIDUES B 502 to 503
6	AC6	SOFTWARE	GLN A:391 , VAL A:392 , ASN A:393 , ARG A:394 , TYR A:453 , GLY A:454 , THR A:455 , HOH A:610 , HOH A:637 , ASN B:200 , HOH B:664 , HOH B:717 , HOH B:756 , HOH B:770 , HOH B:776 , HOH B:784 , HOH B:853 , HOH B:858 , HOH B:927 , HOH B:976	BINDING SITE FOR LINKED RESIDUES B 504 to 508

Asymmetric Unit

No.	Residues
1	A:92	-	A:417
2	A:124	-	A:129
3	A:175	-	A:193
4	A:183	-	A:230
5	A:232	-	A:237
6	A:278	-	A:291
7	A:280	-	A:289
8	A:318	-	A:337
9	A:421	-	A:447
10	B:92	-	B:417
11	B:124	-	B:129
12	B:175	-	B:193
13	B:183	-	B:230
14	B:232	-	B:237
15	B:278	-	B:291
16	B:280	-	B:289
17	B:318	-	B:337
18	B:421	-	B:447

Asymmetric Unit

No.	Residues
1	Tyr A:284	-	Pro A:285
2	Thr A:325	-	Pro A:326
3	Arg A:430	-	Pro A:431
4	Tyr B:284	-	Pro B:285
5	Thr B:325	-	Pro B:326
6	Arg B:430	-	Pro B:431

(no "SAP(SNP)/Variant" information available for 4K1H)

(no "PROSITE Motif" information available for 4K1H)

(no "Exon" information available for 4K1H)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4k1ha_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeeee.hhhhhhh....eeeeeeeeee....eeeeeeeeeee..hhhhh..........eeeeee.........eeeee..eeeeee....eeeeeeeee..eeeeeeee..eeeeeee..............eee..eeeeeeeee.....eeeeeeeee..eeeeeee........eeeeeeee..eeeeeee........eeeee......eeeee....................................eeee..eeeeee.......eeeeeeee...........eeeeeeeeeeeee...eeeeeee....eeeeeeeeeeee.........eeeeeeeeeee.............hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k1h A  82 VEYRNWSKPQCQITGFAPFSKDNSIRLSAGGDIWVTREPYVSCDPGKCYQFALGQGTTLDNKHSNDTVHDRIPHRTLLMNELGVPFHLGTRQVCIAWSSSSCHDGKAWLHVCITGDDKNATASFIYDGRLVDSIGSWSQNILRTQESECVCINGTCTVVMTDGSASGRADTRILFIEEGKIVHISPLSGSAQHIEECSCYPRYPGVRCICRDNWKGSNRPVVDINMEDYSIDSSYVCSGLVGDTPRNDDSSSNSNCRNPNNERGTQGVKGWAFDNGNDLWMGRTISKESRSGYETFKVIGGWSTPNSKSQVNRQVIVDNNNWSGYSGIFSVEGKSCINRCFYVELIRGRPQETRVWWTSNSIVVFCGTSGTYGTGSWPDGANINFMPI 469
                                    91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461

Chain B from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4k1hb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeeee.hhhhhhh....eeeeeeeeee....eeeeeeeeeee..hhhhh..........eeeeee.........eeeee..eeeeee....eeeeeeeee..eeeeeeee..eeeeeee..............eee..eeeeeeeee.....eeeeeeeee..eeeeeee........eeeeeeee..eeeeeee........eeeee......eeeee....................................eeee..eeeeee.......eeeeeeee...........eeeeeeeeeeeee...eeeeeee....eeeeeeeeeeee.........eeeeeeeeeee.............hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k1h B  82 VEYRNWSKPQCQITGFAPFSKDNSIRLSAGGDIWVTREPYVSCDPGKCYQFALGQGTTLDNKHSNDTVHDRIPHRTLLMNELGVPFHLGTRQVCIAWSSSSCHDGKAWLHVCITGDDKNATASFIYDGRLVDSIGSWSQNILRTQESECVCINGTCTVVMTDGSASGRADTRILFIEEGKIVHISPLSGSAQHIEECSCYPRYPGVRCICRDNWKGSNRPVVDINMEDYSIDSSYVCSGLVGDTPRNDDSSSNSNCRNPNNERGTQGVKGWAFDNGNDLWMGRTISKESRSGYETFKVIGGWSTPNSKSQVNRQVIVDNNNWSGYSGIFSVEGKSCINRCFYVELIRGRPQETRVWWTSNSIVVFCGTSGTYGTGSWPDGANINFMPI 469
                                    91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: 6-bladed beta-propeller (327)

Superfamily: Sialidases (238)

Family: Sialidases (neuraminidases) (178)

Protein domain: automated matches (38)

Influenza a virus [TaxId: 382827] (9)

1a	d4k1ha_	A:
1b	d4k1hb_	B:

(no "CATH Domain" information available for 4K1H)

(no "Pfam Domain" information available for 4K1H)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Ligands, Modified Residues, Ions
		BMA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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		AC2	[ RasMol ]	+environment [ RasMol ]
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		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Arg A:430 - Pro A:431	[ RasMol ]
		Arg B:430 - Pro B:431	[ RasMol ]
		Thr A:325 - Pro A:326	[ RasMol ]
		Thr B:325 - Pro B:326	[ RasMol ]
		Tyr A:284 - Pro A:285	[ RasMol ]
		Tyr B:284 - Pro B:285	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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	Q194T1_9INFA \| Q194T1	:	3tia 3tib 3tic 4h52 4h53 4k1i 4k1j 4k1k

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 16)

Sites (6, 6)

SS Bonds (18, 18)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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