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(-) Description

Title :  CRYSTAL STRUCTURE OF RIBOSOME INACTIVATING PROTEIN FROM MOMORDICA BALSAMINA COMPLEXED WITH ASCORBIC ACID AT 1.85 ANGSTROM RESOLUTION
 
Authors :  S. Pandey, A. Bhushan, A. Singh, T. K. Tyagi, M. Sinha, P. Kaur, S. Sharma T. P. Singh
Date :  24 Mar 13  (Deposition) - 17 Apr 13  (Release) - 17 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A
Keywords :  Ribosome Inactivation, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Pandey, A. Bhushan, A. Singh, T. K. Tyagi, M. Sinha, P. Kaur, S. Sharma, T. P. Singh
Crystal Structure Of Ribosome Inactivating Protein From Momordica Balsamina Complexed With Ascorbic Acid At 1. 85 Angstrom Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RRNA N-GLYCOSIDASE
    Chains: A
    EC Number: 3.2.2.22
    Organism Common: BITTER GOURD
    Organism Scientific: MOMORDICA BALSAMINA
    Organism Taxid: 3672

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1ASC1Ligand/IonASCORBIC ACID
2NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:226 , ASN A:227 , THR A:229 , HOH A:1006BINDING SITE FOR RESIDUE NAG A 801
2AC2SOFTWARETYR A:70 , ILE A:71 , GLY A:109 , ASN A:110 , TYR A:111 , HOH A:902 , HOH A:906BINDING SITE FOR RESIDUE ASC A 802

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JTP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JTP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JTP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JTP)

(-) Exons   (0, 0)

(no "Exon" information available for 4JTP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains d4jtpa_ A: automated matches                                                                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhhhh..eeeee..eeee....hhhh.eeeeeee.....eeeeeee.....eeeeee..eeee..hhhhhhhhh.......eeee.....hhhhhhhhhh.hhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh....eeeeeeeee.....eeeeee..hhhhhh......hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4jtp A   1 DVSFRLSGADPSSYGMFIKDLRNALPHTEKVYNIPLLLPSVSGAGRYLLMHLFNYDGNTITVAVDVTNVYIMGYLALTTSYFFNEPAADLASQYVFRSARRKITLPYSGNYERLQIAAGKPREKIPIGLPALDTAISTLLHYDSTAAAGALLVLIQTTAEAARFKYIEQQIQERAYRDEVPSSATISLENSWSGLSKQIQLAQGNNGVFRTPTVLVDSKGNRVQITNVTSNVVTSNIQLLLNTKNI 246
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JTP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JTP)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        D9J2T9_MOMBA | D9J2T9: 3mrw 3n1n 3n2d 3n31 3n3x 3n5d 3nfm 3njs 3nx9 3q4p 3qji 3rl9 3s9q 3sj6 3u6t 3u6z 3u70 3u8f 3v14 3v2k 4dwm 4emf 4emr 4f9n 4fxa 4fz9 4guw 4h0z 4hoa 4i47 4jtb 4k2z 4k6p 4k6s 4kl4 4kmk 4kpv 4kwn 4l66 4lro 4lt4 4lwx 4m5a 4o0o 4o4q 4o8e 4q9f 4qgj 4rzj 4xy7 4zt8 4zu0 4zw4 4zz6 5cix 5cso 5cst 5gm7 5gz7 5ilw 5ilx 5wv1

(-) Related Entries Specified in the PDB File

4g2x 4jtb