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(-) Description

Title :  STRUCTURE OF BOVINE ENDOTHELIAL NITRIC OXIDE SYNTHASE HEME DOMAIN IN COMPLEX WITH 6,6'-(PENTANE-1,5-DIYL)BIS(4-METHYLPYRIDIN-2-AMINE)
 
Authors :  H. Li, T. L. Poulos
Date :  22 Mar 13  (Deposition) - 07 Aug 13  (Release) - 21 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.28
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Nitric Oxide Synthase, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Jing, H. Li, J. Fang, L. J. Roman, P. Martasek, T. L. Poulos, R. B. Silverman
In Search Of Potent And Selective Inhibitors Of Neuronal Nitric Oxide Synthase With More Simple Structures.
Bioorg. Med. Chem. V. 21 5323 2013
PubMed-ID: 23867386  |  Reference-DOI: 10.1016/J.BMC.2013.06.014

(-) Compounds

Molecule 1 - NITRIC OXIDE SYNTHASE, ENDOTHELIAL
    Chains: A, B
    EC Number: 1.14.13.39
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCWORI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: HEME DOMAIN (UNP RESIDUES 40-482)
    Gene: NOS3
    Organism Common: BOVINE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Synonym: CONSTITUTIVE NOS, CNOS, EC-NOS, ENDOTHELIAL NOS, ENOS, NOS TYPE III, NOSIII

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 15)

Asymmetric/Biological Unit (7, 15)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2CAS2Mod. Amino AcidS-(DIMETHYLARSENIC)CYSTEINE
3GOL2Ligand/IonGLYCEROL
4H4B2Ligand/Ion5,6,7,8-TETRAHYDROBIOPTERIN
5HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
6QJ22Ligand/Ion6,6'-PENTANE-1,5-DIYLBIS(4-METHYLPYRIDIN-2-AMINE)
7ZN1Ligand/IonZINC ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETRP A:180 , ARG A:185 , CYS A:186 , SER A:228 , PHE A:355 , SER A:356 , TRP A:358 , GLU A:363 , TRP A:449 , TYR A:477 , H4B A:502 , QJ2 A:503 , ACT A:504 , HOH A:658BINDING SITE FOR RESIDUE HEM A 501
02AC2SOFTWARESER A:104 , ARG A:367 , ALA A:448 , TRP A:449 , HEM A:501 , GOL A:506 , HOH A:659 , TRP B:447 , PHE B:462 , GLN B:464 , GLU B:465BINDING SITE FOR RESIDUE H4B A 502
03AC3SOFTWAREASN A:340 , MET A:341 , PHE A:355 , TRP A:358 , TYR A:359 , GLU A:363 , TYR A:477 , HEM A:501BINDING SITE FOR RESIDUE QJ2 A 503
04AC4SOFTWAREILE A:190 , TRP A:358 , SER A:428 , HEM A:501 , HOH A:626BINDING SITE FOR RESIDUE ACT A 504
05AC5SOFTWAREARG A:252 , ASN A:368 , ARG A:374 , HOH A:654BINDING SITE FOR RESIDUE ACT A 505
06AC6SOFTWAREARG A:367 , HIS A:373 , H4B A:502BINDING SITE FOR RESIDUE GOL A 506
07AC7SOFTWARECYS A:96 , CYS A:101 , CYS B:96 , CYS B:101BINDING SITE FOR RESIDUE ZN A 507
08AC8SOFTWARETRP B:180 , ARG B:185 , CYS B:186 , SER B:228 , PHE B:355 , SER B:356 , GLY B:357 , TRP B:358 , GLU B:363 , PHE B:475 , TYR B:477 , H4B B:502 , QJ2 B:503 , HOH B:655 , HOH B:680BINDING SITE FOR RESIDUE HEM B 501
09AC9SOFTWARETRP A:447 , PHE A:462 , SER B:104 , ARG B:367 , ALA B:448 , TRP B:449 , HEM B:501 , GOL B:506 , HOH B:651 , HOH B:655BINDING SITE FOR RESIDUE H4B B 502
10BC1SOFTWAREVAL B:106 , ASN B:340 , MET B:341 , TRP B:358 , TYR B:359 , GLU B:363 , TYR B:477 , HEM B:501 , HOH B:607BINDING SITE FOR RESIDUE QJ2 B 503
11BC2SOFTWAREGLY B:188 , TRP B:358 , SER B:428BINDING SITE FOR RESIDUE ACT B 504
12BC3SOFTWAREGLN B:249 , ARG B:252 , ASN B:368 , ARG B:374BINDING SITE FOR RESIDUE ACT B 505
13BC4SOFTWAREVAL B:106 , ARG B:367 , HIS B:373 , H4B B:502BINDING SITE FOR RESIDUE GOL B 506

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JSK)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser A:472 -Pro A:473
2Ser B:472 -Pro B:473

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JSK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JSK)

(-) Exons   (0, 0)

(no "Exon" information available for 4JSK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:404
                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4jska_ A: Nitric oxide (NO) synthase oxygenase domain                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee......eee.hhhhhh....................hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhh...eeee.....hhhhhhhhhhhhhhhhhhhhh...eeee...........ee.........eee.....eee...hhhhhhhhhhh.............eeee......eee..hhhhh.eee.....hhhhhhhh.eee...ee...eeee..eee....ee...hhhhhhhhhhhh.....hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh....hhhhhh...hhhhhhhhhh.........eee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jsk A  67 GPKFPRVKNWELGSITYDTLCAQSQQDGPCTPRRCLGSLVLPPAEQLLSQARDFINQYYSSIKRSGSQAHEERLQEVEAEVASTGTYHLRESELVFGAKQAWRNAPRCVGRIQWGKLQVFDARDCSSAQEMFTYICNHIKYATNRGNLRSAITVFPQRAPGRGDFRIWNSQLVRYAGYRQQDGSVRGDPANVEITELCIQHGWTPGNGRFDVLPLLLQAPDEAPELFVLPPELVLEVPLEHPTLEWFAALGLRWYALPAVSNMLLEIGGLEFSAAPFSGWYMSTEIGTRNLCDPHRYNILEDVAVcMDLDTRTTSSLWKDKAAVEINLAVLHSFQLAKVTIVDHHAATVSFMKHLDNEQKARGGCPADWAWIVPPISGSLTPVFHQEMVNYILSPAFRYQPDPW 482
                                    76        86        96       106 ||    128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378     | 388       398       408       418       428       438       448       458       468       478    
                                                                   108|                                                                                                                                                                                                                                                                    384-CAS                                                                                              
                                                                    121                                                                                                                                                                                                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:404
                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4jskb_ B: Nitric oxide (NO) synthase oxygenase domain                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee......eee.hhhhhh.....................hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.....hhhhh...eeee.....hhhhhhhhhhhhhhhhhhhhh...eeee...........ee.........eee.....eee...hhhhhhhhhhh.............eeee......eee........eee.....hhhhhhhh.eee...ee...eeee..eee....ee...hhhhhhhhhhhh.....hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh....hhhhhh...hhhhhhhhhh.........eee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jsk B  69 KFPRVKNWELGSITYDTLCAQSQQDGPCTPRRCLGSLVLPRKPAEQLLSQARDFINQYYSSIKRSGSQAHEERLQEVEAEVASTGTYHLRESELVFGAKQAWRNAPRCVGRIQWGKLQVFDARDCSSAQEMFTYICNHIKYATNRGNLRSAITVFPQRAPGRGDFRIWNSQLVRYAGYRQQDGSVRGDPANVEITELCIQHGWTPGNGRFDVLPLLLQAPDEAPELFVLPPELVLEVPLEHPTLEWFAALGLRWYALPAVSNMLLEIGGLEFSAAPFSGWYMSTEIGTRNLCDPHRYNILEDVAVcMDLDTRTTSSLWKDKAAVEINLAVLHSFQLAKVTIVDHHAATVSFMKHLDNEQKARGGCPADWAWIVPPISGSLTPVFHQEMVNYILSPAFRYQPDPW 482
                                    78        88        98       108 ||    128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378     | 388       398       408       418       428       438       448       458       468       478    
                                                                   110|                                                                                                                                                                                                                                                                    384-CAS                                                                                              
                                                                    121
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JSK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JSK)

(-) Gene Ontology  (27, 27)

Asymmetric/Biological Unit(hide GO term definitions)

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    Ser A:472 - Pro A:473   [ RasMol ]  
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  NOS3_BOVIN | P29473
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NOS3_BOVIN | P29473: 1d0c 1d0o 1d1v 1d1w 1d1x 1d1y 1dm6 1dm7 1dm8 1dmi 1dmj 1dmk 1ed4 1ed5 1ed6 1foi 1foj 1fol 1foo 1fop 1i83 1nse 1p6l 1p6m 1p6n 1q2o 1rs8 1rs9 1zzs 1zzt 2g6o 2hx2 2nse 3dqs 3dqt 3e7s 3jww 3jwx 3jwy 3jwz 3n5p 3n5q 3n5r 3n5s 3n5t 3nld 3nle 3nlf 3nlg 3nlh 3nli 3nlt 3nlu 3nse 3pnh 3rqo 3rqp 4c3a 4car 4cft 4cty 4ctz 4cu0 4cu1 4cul 4cum 4cun 4cvg 4cwv 4cww 4cwx 4cwy 4cwz 4cx0 4cx1 4cx2 4d33 4d34 4d35 4d36 4d37 4d38 4d39 4d3a 4imx 4jsl 4jsm 4k5h 4k5i 4k5j 4k5k 4kcp 4kcq 4kcr 4kcs 4luw 4nse 4uh7 4uh8 4uh9 4uha 4upq 4upr 4ups 4upt 5adj 5adk 5adl 5adm 5adn 5fj2 5fj3 5fvy 5fvz 5nse 5uod 6nse 7nse 8nse 9nse

(-) Related Entries Specified in the PDB File

4jse 4jsf 4jsg 4jsh 4jsi 4jsj 4jsl 4jsm