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(-) Description

Title :  CRYSTAL STRUCTURE OF PRO-F17H/S324A
 
Authors :  K. Yuzaki, D. J. You, R. Uehara, Y. Koga, S. Kanaya
Date :  19 Mar 13  (Deposition) - 29 Jan 14  (Release) - 29 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.21
Chains :  Asym./Biol. Unit :  A
Keywords :  Subtilisin-Like Serine Protease, Hydrolase, Subtillisin, Thermococcus Kodakarensis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Yuzaki, Y. Sanda, D. J. You, R. Uehara, Y. Koga, S. Kanaya
Increase In Activation Rate Of Pro-Tk-Subtilisin By A Singl Nonpolar-To-Polar Amino Acid Substitution At The Hydrophobi Core Of The Propeptide Domain
Protein Sci. V. 22 1711 2013
PubMed-ID: 24115021  |  Reference-DOI: 10.1002/PRO.2371

(-) Compounds

Molecule 1 - TK-SUBTILISIN
    Chains: A
    EC Number: 3.4.21.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET25B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 25-422
    Gene: TK1675
    Mutation: YES
    Organism Scientific: THERMOCOCCUS KODAKARENSIS
    Organism Taxid: 69014
    Strain: ATCC BAA-918 / JCM 12380 / KOD1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric/Biological Unit (1, 6)
No.NameCountTypeFull Name
1CA6Ligand/IonCALCIUM ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:84 , ASP A:124 , LEU A:164 , ASN A:166 , ILE A:168 , VAL A:170BINDING SITE FOR RESIDUE CA A 701
2AC2SOFTWARELEU A:205 , ASP A:208 , VAL A:210 , ALA A:211 , ASP A:226BINDING SITE FOR RESIDUE CA A 702
3AC3SOFTWAREASP A:212 , ASP A:214 , ASP A:216 , ILE A:218 , ASP A:222 , ASP A:225BINDING SITE FOR RESIDUE CA A 703
4AC4SOFTWAREASP A:214 , ASP A:216 , ASP A:222 , ASP A:224BINDING SITE FOR RESIDUE CA A 704
5AC5SOFTWAREVAL A:108 , GLN A:110 , ALA A:227 , GLU A:229 , HOH A:803BINDING SITE FOR RESIDUE CA A 705
6AC6SOFTWAREASP A:372 , LEU A:373 , PRO A:375 , GLY A:377 , ASP A:379BINDING SITE FOR RESIDUE CA A 706

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JP8)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:272 -Pro A:273

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JP8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JP8)

(-) Exons   (0, 0)

(no "Exon" information available for 4JP8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:395
                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee......hhhhhhh..eeeee.....eeeeeehhhhhhhhhhh..eeeeee..eeee..ee..............hhhhhhh.hhhhhhh........eeeeee.........hhh.eeeeee.hhhh...hhhhhh...hhhhhhhhhhhh..............eeeeee......eeehhhhhhhhhhhhhh.......................eeee.ee....hhhhhhhhhhhhhh..eeeee..................eeeeee...............eeee...eeeee...eeeeeehhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhh.................hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jp8 A   4 NTIRVIVSVDKAKHNPHEVLGIGGHIVYQFKLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAANIAWCVSTLRGKVSTKLRDCADQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYPDDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDADYGYGVVRAALAVQAALG 398
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JP8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JP8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JP8)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Tyr A:272 - Pro A:273   [ RasMol ]  
 

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  4jp8
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  TKSU_THEKO | P58502
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TKSU_THEKO | P58502: 2e1p 2z2x 2z2y 2z2z 2z30 2z56 2z57 2z58 2zrq 2zwo 2zwp 3a3n 3a3o 3a3p 3vhq 3vv2 3wiu 3wiv

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4JP8)