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(-) Description

Title :  HIGH RESOLUTION STRUCTURE OF A PAPAYA BARWIN-LIKE PROTEIN (CRYSTAL FORM 2)
 
Authors :  A. Wohlkonig, R. Wintjens
Date :  19 Mar 13  (Deposition) - 02 Oct 13  (Release) - 15 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.05
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Pathogenesis-Related Protein Of Family 4, Barwin Family, Double-Psi Beta Barrel, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Huet, E. J. Teinkela Mbosso, S. Soror, F. Meyer, Y. Looze, R. Wintjens, A. Wohlkonig
High-Resolution Structure Of A Papaya Plant-Defence Barwin-Like Protein Solved By In-House Sulfur-Sad Phasing.
Acta Crystallogr. , Sect. D V. 69 2017 2013
PubMed-ID: 24100320  |  Reference-DOI: 10.1107/S0907444913018015

(-) Compounds

Molecule 1 - PAPAYA BARWIN-LIKE PROTEIN
    Chains: A, B
    Organism Scientific: CARICA PAPAYA
    Organism Taxid: 3649
    Other Details: PROTEIN EXTRACTED FROM THE LATEX OF THE PLANT CARICA PAPAYA
    Synonym: PAPAYA LATEX PR-4 PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2PCA2Mod. Amino AcidPYROGLUTAMIC ACID
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2PCA1Mod. Amino AcidPYROGLUTAMIC ACID
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2PCA1Mod. Amino AcidPYROGLUTAMIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:73 , HIS B:11 , TYR B:13 , ASP B:82 , CYS B:84 , ASP B:90 , HOH B:318 , HOH B:328 , HOH B:345 , HOH B:374BINDING SITE FOR RESIDUE GOL B 201

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:29 -A:61
2A:50 -A:84
3A:64 -A:120
4B:29 -B:61
5B:50 -B:84
6B:64 -B:120

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JP7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JP7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JP7)

(-) Exons   (0, 0)

(no "Exon" information available for 4JP7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains d4jp7a_ A: automated matches                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee...hhhhh.........hhhhhh..hhhhhh..eeeee......hhhhhh..eeeeee.....eeeeeeeee.....eeeehhhhhhhh..hhhhhhh.eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jp7 A   1 xSASNVRATYHFYNAQQNGWDLRKVSAYCATWDADKPYSWRSKYGWTAFCGPVGPHGRAACGKCLRVTNTKTRAETTVRIVDQCSNGGLDLDWSVFKKLDTDGSGYLRGHLIVNYQFVNCGN 122
                            |       10        20        30        40        50        60        70        80        90       100       110       120  
                            |                                                                                                                         
                            1-PCA                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains d4jp7b_ B: automated matches                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee...hhhhh.hhhhhhhhhhhhhh..hhhhhh..eeeee......hhhhhh..eeeeee.....eeeeeeeee.....eeeehhhhhhhh..hhhhhhh.eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jp7 B   1 xSASNVRATYHFYNAQQNGWDLRKVSAYCATWDADKPYSWRSKYGWTAFCGPVGPHGRAACGKCLRVTNTKTRAETTVRIVDQCSNGGLDLDWSVFKKLDTDGSGYLRGHLIVNYQFVNCGN 122
                            |       10        20        30        40        50        60        70        80        90       100       110       120  
                            1-PCA
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JP7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JP7)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        U5HK42_CARPA | U5HK42: 4jp6

(-) Related Entries Specified in the PDB File

4jp6 THE SAME PROTEIN IN ANOTHER CRYSTAL FORM