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(-) Description

Title :  PUTATIVE RIBOSE ABC TRANSPORTER, PERIPLASMIC SOLUTE-BINDING PROTEIN FROM RHODOBACTER SPHAEROIDES
 
Authors :  J. Osipiuk, C. Tesar, M. Endres, A. Joachimiak, Midwest Center For S Genomics (Mcsg)
Date :  18 Mar 13  (Deposition) - 10 Apr 13  (Release) - 10 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Ribose, Abc Transporter, Solute-Binding Protein, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Osipiuk, C. Tesar, M. Endres, A. Joachimiak
Putative Ribose Abc Transporter, Periplasmic Solute-Binding Protein From Rhodobacter Sphaeroides.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ABC RIBOSE TRANSPORTER, PERIPLASMIC SOLUTE-BINDING PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG68
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RBSB, RSPH17025_2685
    Mutation: YES
    Organism Scientific: RHODOBACTER SPHAEROIDES
    Organism Taxid: 349102
    Strain: ATCC 17025

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 22)

Asymmetric/Biological Unit (3, 22)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MSE20Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:174 , ASP A:223 , TYR A:271BINDING SITE FOR RESIDUE ACT A 401
2AC2SOFTWAREARG A:164 , MSE A:192 , HOH A:610 , ARG B:164 , MSE B:192 , HIS B:194BINDING SITE FOR RESIDUE EDO B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JOQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JOQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JOQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JOQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4JOQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:297
                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d4joqa_ A: automated matches                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeee...hhhhhhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhh..eeeee...........eeeeehhhhhhhhhhhhhhhhh....eeeeee...hhhhhhhhhhhhhhh.....eeeeeee...hhhhhhhhhhhhhhhh....eee..hhhhhhhhhhhhhhh.hhhhheee....hhhhhhhhhh.......ee....hhhhhhhhhhhhhhhh.....eeeee...ee...hhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4joq A  23 SNAQEKVGTIGIAIPSATHGFmGGLNFHAQDTIKRLQEVYPQLDFVLATAGNAGKmVNDIEDmVATRNISALVVLPFESEPLTSPVQAVKEAGIWVTVVDRGLSVEGIEDLYVAGDNPGFGRVAGEYFAQHLESGKKIVVLRGIPTTLDNERVEAFTAAIEGSGIEVLDmQHGNWNRDDAFNVmQDFLSKYPQIDAVWAADDDmAIGAmEAIAQAGRTEEmWVmGGAGmKEIIRRIADGDPQLPANVTYPPAQISTAIELTALKLVSSTPVSGRFIIGSQLVTPENAEQFYFPDSPF 319
                                    32        42 |      52        62        72     |  82  |     92       102       112       122       132       142       152       162       172       182       192       202   |   212       222   |   232       242|  |   252       262       272       282       292       302       312       
                                                44-MSE                            78-MSE 85-MSE                                                                                                    192-MSE       206-MSE             226-MSE|         243-MSE   |                                                                    
                                                                                                                                                                                                                                          231-MSE        246-MSE|                                                                    
                                                                                                                                                                                                                                                              251-MSE                                                                


Chain B from PDB  Type:PROTEIN  Length:295
                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4joqb_ B: automated matches                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee...hhhhhhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh..eeeee...........eeeeehhhhhhhhhhhhhhhhh....eeeeee...hhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhhh....eee..hhhhhhhhhhhhhhh.hhhhheee....hhhhhhhhhh.......ee....hhhhhhhhhhhhhhhh.....eeeee...ee...hhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4joq B  25 AQEKVGTIGIAIPSATHGFmGGLNFHAQDTIKRLQEVYPQLDFVLATAGNAGKmVNDIEDmVATRNISALVVLPFESEPLTSPVQAVKEAGIWVTVVDRGLSVEGIEDLYVAGDNPGFGRVAGEYFAQHLESGKKIVVLRGIPTTLDNERVEAFTAAIEGSGIEVLDmQHGNWNRDDAFNVmQDFLSKYPQIDAVWAADDDmAIGAmEAIAQAGRTEEmWVmGGAGmKEIIRRIADGDPQLPANVTYPPAQISTAIELTALKLVSSTPVSGRFIIGSQLVTPENAEQFYFPDSPF 319
                                    34        44        54        64        74   |    84|       94       104       114       124       134       144       154       164       174       184       194       204 |     214       224 |    |234       244 |    |254       264       274       284       294       304       314     
                                              44-MSE                            78-MSE 85-MSE                                                                                                    192-MSE       206-MSE             226-MSE|         243-MSE   |                                                                    
                                                                                                                                                                                                                                        231-MSE        246-MSE|                                                                    
                                                                                                                                                                                                                                                            251-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JOQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JOQ)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4JOQ)

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