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(-) Description

Title :  STRUCTURE OF A CYCLOPHILIN FROM CITRUS SINENSIS (CSCYP) IN COMPLEX WITH CYCLOPORIN A
 
Authors :  B. M. Campos, A. L. B. Ambrosio, T. A. C. B. Souza, J. A. R. G. Barbosa, C. E.
Date :  08 Mar 13  (Deposition) - 12 Jun 13  (Release) - 21 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.09
Chains :  Asym. Unit :  A,B,E,F
Biol. Unit 1:  A,F  (1x)
Biol. Unit 2:  B,E  (1x)
Keywords :  Cyclophilin, Isomerase-Immunosuppressant Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. M. Campos, M. L. Sforca, A. L. Ambrosio, M. N. Domingues, A. Brasil De Souza Tde, J. A. R. G. Barbosa, A. F. Paes Leme, C. A. Perez, S. B. Whittaker, M. T. Murakami, A. C. Zeri, C. E. Benedetti
A Redox 2-Cys Mechanism Regulates The Catalytic Activity Of Divergent Cyclophilins.
Plant Physiol. V. 162 1311 2013
PubMed-ID: 23709667  |  Reference-DOI: 10.1104/PP.113.218339

(-) Compounds

Molecule 1 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
    Chains: A, B
    EC Number: 5.2.1.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CYP
    Organism Common: VALENCIA ORANGE,APFELSINE,NARANJA,NAVEL ORANGE, SWEET ORANGE
    Organism Scientific: CITRUS SINENSIS
    Organism Taxid: 2711
 
Molecule 2 - CYCLOSPORIN A
    Chains: E, F
    Engineered: YES
    Organism Scientific: TOLYPOCLADIUM INFLATUM
    Organism Taxid: 29910
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABEF
Biological Unit 1 (1x): A  F
Biological Unit 2 (1x):  BE 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 18)

Asymmetric Unit (6, 18)
No.NameCountTypeFull Name
1ABA2Mod. Amino AcidALPHA-AMINOBUTYRIC ACID
2BMT2Mod. Amino Acid4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE
3DAL2Mod. Amino AcidD-ALANINE
4MLE8Mod. Amino AcidN-METHYLLEUCINE
5MVA2Mod. Amino AcidN-METHYLVALINE
6SAR2Mod. Amino AcidSARCOSINE
Biological Unit 1 (6, 9)
No.NameCountTypeFull Name
1ABA1Mod. Amino AcidALPHA-AMINOBUTYRIC ACID
2BMT1Mod. Amino Acid4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE
3DAL1Mod. Amino AcidD-ALANINE
4MLE4Mod. Amino AcidN-METHYLLEUCINE
5MVA1Mod. Amino AcidN-METHYLVALINE
6SAR1Mod. Amino AcidSARCOSINE
Biological Unit 2 (6, 9)
No.NameCountTypeFull Name
1ABA1Mod. Amino AcidALPHA-AMINOBUTYRIC ACID
2BMT1Mod. Amino Acid4-METHYL-4-[(E)-2-BUTENYL]-4,N-METHYL-THREONINE
3DAL1Mod. Amino AcidD-ALANINE
4MLE4Mod. Amino AcidN-METHYLLEUCINE
5MVA1Mod. Amino AcidN-METHYLVALINE
6SAR1Mod. Amino AcidSARCOSINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:78 , THR A:80 , SER A:156 , ARG B:62 , PHE B:67 , GLN B:70 , GLY B:79 , ALA B:108 , ASN B:109 , ALA B:110 , GLN B:118 , PHE B:120 , TRP B:128 , HIS B:133 , HOH E:102 , HOH E:104 , HOH E:105 , HOH E:108 , SAR F:7 , HOH F:101BINDING SITE FOR CHAIN E OF CYCLOSPORIN A
2AC2SOFTWAREARG A:62 , PHE A:67 , GLN A:70 , ALA A:108 , ASN A:109 , GLN A:118 , PHE A:120 , TRP A:128 , HIS A:133 , HOH A:329 , PRO B:65 , GLY B:66 , SER B:155 , MLE E:8 , HOH E:104 , HOH F:101 , HOH F:102 , HOH F:105 , HOH F:106BINDING SITE FOR CHAIN F OF CYCLOSPORIN A

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JJM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JJM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JJM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JJM)

(-) Exons   (0, 0)

(no "Exon" information available for 4JJM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..eeeeeeeeee....hhhhhhhhhhhhhh.................eeeee...eeee................................eeee...........eeee...hhhhh....eeeeeeehhhhhhhhhhh..........eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jjm A   3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 172
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172


Chain B from PDB  Type:PROTEIN  Length:169
                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..eeeeeeeeee....hhhhhhhhhhhhhh...................eee...eeee................................eeee...........eeee...hhhhh....eeeeeeehhhhhhhhhh...........eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jjm B   3 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 171
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162         


Chain E from PDB  Type:PROTEIN  Length:11
                                           
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author ........... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                 4jjm E   1 xllvtaglVlA  11
                            ||||||||10 
                            1-DAL||| | 
                             2-MLE|| | 
                              3-MLE| | 
                               4-MVA | 
                                5-BMT| 
                                 6-ABA 
                                  7-SAR
                                   8-MLE
                                    10-MLE


Chain F from PDB  Type:PROTEIN  Length:11
                                           
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author ........... Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                 4jjm F   1 xllvtaglVlA  11
                            ||||||||10 
                            |||||||| | 
                            1-DAL||| | 
                             2-MLE|| | 
                              3-MLE| | 
                               4-MVA | 
                                5-BMT| 
                                 6-ABA 
                                  7-SAR
                                   8-MLE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JJM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JJM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JJM)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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