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(-) Description

Title :  THE STRUCTURE OF T. FUSCA GH48 D224N MUTANT
 
Authors :  P. M. Alahuhta, V. V. Lunin
Date :  07 Mar 13  (Deposition) - 30 Jul 14  (Release) - 30 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Gh48, (A/A)6, Cellobiohydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Kostylev, M. Alahuhta, M. Chen, R. Brunecky, M. E. Himmel, V. V. Lunin, J. Brady, D. B. Wilson
Cel48A From Thermobifida Fusca: Structure And Site Directed Mutagenesis Of Key Residues.
Biotechnol. Bioeng. V. 111 664 2014
PubMed-ID: 24264519  |  Reference-DOI: 10.1002/BIT.25139

(-) Compounds

Molecule 1 - CELLULOSE 1,4-BETA-CELLOBIOSIDASE
    Chains: A
    EC Number: 3.2.1.91
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 343-984
    Gene: TFU_1959
    Mutation: YES
    Organism Scientific: THERMOBIFIDA FUSCA
    Organism Taxid: 2021

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (9, 38)

Asymmetric/Biological Unit (9, 38)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CA4Ligand/IonCALCIUM ION
3CBI1Ligand/IonCELLOBIOSE
4CBK1Ligand/Ion4-O-BETA-D-GLUCOPYRANOSYL-ALPHA-D-GLUCOPYRANOSE
5CE61Ligand/IonCELLOHEXAOSE
6EDO1Ligand/Ion1,2-ETHANEDIOL
7FE4Ligand/IonFE (III) ION
8NA3Ligand/IonSODIUM ION
9ZN21Ligand/IonZINC ION

(-) Sites  (38, 38)

Asymmetric Unit (38, 38)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:32 , GLU A:40 , GLU A:51 , TRP A:414 , PHE A:417 , TRP A:420 , ASP A:498 , ARG A:619 , TRP A:621 , HOH A:838 , HOH A:861 , HOH A:862 , HOH A:878 , HOH A:879 , HOH A:907 , HOH A:942 , HOH A:1114 , HOH A:1177 , HOH A:1193BINDING SITE FOR RESIDUE CBI A 701
02AC2SOFTWAREHIS A:32 , GLU A:40 , GLU A:51 , TRP A:414 , PHE A:417 , TRP A:420 , ASP A:498 , ARG A:619 , TRP A:621 , HOH A:838 , HOH A:862 , HOH A:878 , HOH A:879 , HOH A:907 , HOH A:942 , HOH A:1177 , HOH A:1193 , HOH A:1390 , HOH A:1772BINDING SITE FOR RESIDUE CBK A 702
03AC3SOFTWAREALA A:103 , THR A:104 , LEU A:119 , TRP A:148 , ASN A:173 , TYR A:175 , GLN A:176 , THR A:208 , ASP A:210 , THR A:220 , ASN A:221 , LYS A:270 , TYR A:271 , TRP A:299 , TYR A:300 , TRP A:315 , ILE A:317 , TYR A:326 , TRP A:406 , HOH A:827 , HOH A:829 , HOH A:862 , HOH A:913 , HOH A:1007 , HOH A:1065 , HOH A:1209 , HOH A:1213 , HOH A:1214 , HOH A:1273 , HOH A:1275 , HOH A:1279 , HOH A:1280 , HOH A:1619 , HOH A:1620 , HOH A:1663 , HOH A:1935BINDING SITE FOR RESIDUE CE6 A 703
04AC4SOFTWAREARG A:180 , GLU A:185 , ASP A:408 , GLU A:560 , HOH A:819 , HOH A:826BINDING SITE FOR RESIDUE CA A 704
05AC5SOFTWAREASP A:550 , ASP A:553 , ASP A:554 , HOH A:1158 , HOH A:1292 , HOH A:1804BINDING SITE FOR RESIDUE CA A 705
06AC6SOFTWAREGLU A:438 , ASP A:442 , HOH A:809 , HOH A:1020 , HOH A:1334BINDING SITE FOR RESIDUE CA A 706
07AC7SOFTWARECYS A:161 , ASP A:194 , HOH A:978 , HOH A:1376 , HOH A:1409 , HOH A:1678BINDING SITE FOR RESIDUE CA A 707
08AC8SOFTWAREASP A:254 , ASP A:344 , HOH A:1063 , HOH A:1082 , HOH A:1685 , HOH A:1811 , HOH A:1929BINDING SITE FOR RESIDUE NA A 708
09AC9SOFTWAREASP A:530 , HOH A:1014 , HOH A:1889 , HOH A:1933 , HOH A:1934BINDING SITE FOR RESIDUE NA A 709
10BC1SOFTWAREHIS A:74 , GLU A:248 , HOH A:894 , HOH A:1402 , HOH A:1463BINDING SITE FOR RESIDUE NA A 710
11BC2SOFTWAREHIS A:197 , HOH A:990 , HOH A:995 , HOH A:1033 , HOH A:1083 , HOH A:1093BINDING SITE FOR RESIDUE FE A 711
12BC3SOFTWAREHIS A:451 , HOH A:994 , HOH A:1890 , HOH A:1904 , HOH A:1923 , HOH A:1924 , HOH A:1925 , HOH A:1926BINDING SITE FOR RESIDUE FE A 712
13BC4SOFTWAREASP A:386 , HOH A:1069 , HOH A:1829 , HOH A:1907 , HOH A:1908 , HOH A:1927BINDING SITE FOR RESIDUE FE A 713
14BC5SOFTWAREASP A:254 , HOH A:1043 , HOH A:1181 , HOH A:1318 , HOH A:1323 , HOH A:1373 , HOH A:1810BINDING SITE FOR RESIDUE FE A 714
15BC6SOFTWAREGLU A:11 , ASP A:15BINDING SITE FOR RESIDUE ZN A 715
16BC7SOFTWAREHIS A:603 , ZN A:730 , ZN A:735 , ACT A:736 , HOH A:1936BINDING SITE FOR RESIDUE ZN A 716
17BC8SOFTWAREHIS A:237 , GLU A:246 , GLU A:340 , ZN A:727 , HOH A:1364 , HOH A:1887BINDING SITE FOR RESIDUE ZN A 717
18BC9SOFTWAREGLU A:526 , HIS A:633 , ACT A:737 , HOH A:1922BINDING SITE FOR RESIDUE ZN A 718
19CC1SOFTWAREASP A:357 , GLU A:361 , GLU A:601 , HOH A:803BINDING SITE FOR RESIDUE ZN A 719
20CC2SOFTWAREZN A:721 , HOH A:1130 , HOH A:1162 , HOH A:1359 , HOH A:1526 , HOH A:1649 , HOH A:1793 , HOH A:1794BINDING SITE FOR RESIDUE ZN A 720
21CC3SOFTWAREZN A:720 , HOH A:1130 , HOH A:1162 , HOH A:1359 , HOH A:1792 , HOH A:1793 , HOH A:1794BINDING SITE FOR RESIDUE ZN A 721
22CC4SOFTWAREGLN A:461 , HIS A:535 , ZN A:723 , ZN A:725 , HOH A:1295 , HOH A:1312BINDING SITE FOR RESIDUE ZN A 722
23CC5SOFTWAREHIS A:535 , ZN A:722 , ZN A:724 , ZN A:725 , ZN A:726 , HOH A:1195 , HOH A:1295 , HOH A:1306BINDING SITE FOR RESIDUE ZN A 723
24CC6SOFTWAREGLU A:616 , ZN A:723 , ZN A:725 , ZN A:726 , HOH A:1306 , HOH A:1436 , HOH A:1661BINDING SITE FOR RESIDUE ZN A 724
25CC7SOFTWAREZN A:722 , ZN A:723 , ZN A:724 , HOH A:1194 , HOH A:1295 , HOH A:1436 , HOH A:1784BINDING SITE FOR RESIDUE ZN A 725
26CC8SOFTWAREZN A:723 , ZN A:724 , HOH A:1195 , HOH A:1447 , HOH A:1661 , HOH A:1785BINDING SITE FOR RESIDUE ZN A 726
27CC9SOFTWAREHIS A:237 , GLU A:246 , GLU A:340 , ZN A:717 , HOH A:1364 , HOH A:1577BINDING SITE FOR RESIDUE ZN A 727
28DC1SOFTWAREHIS A:46 , ASP A:153 , ZN A:729 , HOH A:1881 , HOH A:1883BINDING SITE FOR RESIDUE ZN A 728
29DC2SOFTWAREASP A:153 , ZN A:728 , HOH A:1882 , HOH A:1883 , HOH A:1884 , HOH A:1885BINDING SITE FOR RESIDUE ZN A 729
30DC3SOFTWARESER A:548 , TRP A:549 , ASP A:550 , HIS A:603 , LEU A:604 , ZN A:716 , ZN A:735 , ACT A:736BINDING SITE FOR RESIDUE ZN A 730
31DC4SOFTWAREHIS A:74 , HOH A:1895 , HOH A:1896 , HOH A:1910BINDING SITE FOR RESIDUE ZN A 731
32DC5SOFTWAREGLU A:78 , GLU A:81 , LYS A:255 , HOH A:1107 , HOH A:1149 , HOH A:1808 , HOH A:1897 , HOH A:1898BINDING SITE FOR RESIDUE ZN A 732
33DC6SOFTWAREASP A:468 , GLU A:470 , HOH A:1070 , HOH A:1191 , HOH A:1192 , HOH A:1657 , HOH A:1716 , HOH A:1928BINDING SITE FOR RESIDUE ZN A 733
34DC7SOFTWAREGLY A:480 , ASP A:553 , HOH A:1041 , HOH A:1831 , HOH A:1832 , HOH A:1916 , HOH A:1917BINDING SITE FOR RESIDUE ZN A 734
35DC8SOFTWAREZN A:716 , ZN A:730 , ACT A:736 , HOH A:1886 , HOH A:1921 , HOH A:1936BINDING SITE FOR RESIDUE ZN A 735
36DC9SOFTWAREHIS A:603 , ZN A:716 , ZN A:730 , ZN A:735 , HOH A:1936BINDING SITE FOR RESIDUE ACT A 736
37EC1SOFTWAREGLU A:526 , HIS A:633 , PHE A:637 , ZN A:718 , HOH A:1922BINDING SITE FOR RESIDUE ACT A 737
38EC2SOFTWAREGLU A:238 , TYR A:430 , HOH A:1343 , HOH A:1385 , HOH A:1579BINDING SITE FOR RESIDUE EDO A 738

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:161 -A:192
2A:278 -A:284

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Tyr A:115 -Pro A:116
2Asp A:408 -Pro A:409

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JJJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JJJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4JJJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:636
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.eeee..eeee................eeehhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh........hhhhh.............hhhhh.ee...........hhhhhhhhhh.........eee..................eeee...............ee.ee.........hhhh.ee......eeeee.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhh........eeeee.....eeee...eee.hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh.........eee.hhhhh.........ee..eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh.....eeeeeeeee..............eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhh...............ee.....ee.........hhhhhhh.hhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4jjj A   1 SYDQAFLEQYEKIKDPASGYFREFNGLLVPYHSVETMIVEAPDHGHQTTSEAFSYYLWLEAYYGRVTGDWKPLHDAWESMETFIIPGTKDQPTNSAYNPNSPATYIPEQPNADGYPSPLMNNVPVGQDPLAQELSSTYGTNEIYGMHWLLDVDNVYGFGFCGDGTDDAPAYINTYQRGARESVWETIPHPSCDDFTHGGPNGYLDLFTDDQNYAKQWRYTNAPNADARAVQVMFWAHEWAKEQGKENEIAGLMDKASKMGDYLRYAMFDKYFKKIGNCVGATSCPGGQGKDSAHYLLSWYYSWGGSLDSAWAWRIGSSSSHQGYQNVLAAYALSQVPELQPDSPTGVQDWATSFDRQLEFLQWLQSAEGGIAGGATNSWKGSYDTPPTGLSQFYGMYYDWQPVWNDPPSNNWFGFQVWNMERVAQLYYVTGDARAEAILDKWVPWAIQHTDVDADNGGQNFQVPSDLEWSGQPDTWTGTYTGNPNLHVQVVSYSQDVGVTAALAKTLMYYAKRSGDTTALATAEGLLDALLAHRDSIGIATPEQPSWDRLDDPWDGSEGLYVPPGWSGTMPNGDRIEPGATFLSIRSFYKNDPLWPQVEAHLNDPQNVPAPIVERHRFWAQVEIATAFAAHDELFG 638
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632      
                                                                                                                                                                                                                                                                                                                                             308|                                                                                                                                                                                                                                                                                                                                       
                                                                                                                                                                                                                                                                                                                                              311
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JJJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JJJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JJJ)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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