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(-) Description

Title :  CRYSTAL STRUCTURE OF THE RECOR COMPLEX IN AN OPEN CONFORMATION
 
Authors :  J. Radzimanowski, S. Mcsweeney, J. Timmins
Date :  22 Feb 13  (Deposition) - 07 Aug 13  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.34
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Homologous Recombination, Recfor Pathway, Dna Binding, Zinc-Finger, Dna Damage, Dna Repair, Recr, Reco, Recor, Recombination (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Radzimanowski, F. Dehez, A. Round, A. Bidon-Chanal, S. Mcsweeney, J. Timmins
An 'Open' Structure Of The Recor Complex Supports Ssdna Binding Within The Core Of The Complex.
Nucleic Acids Res. V. 41 7972 2013
PubMed-ID: 23814185  |  Reference-DOI: 10.1093/NAR/GKT572

(-) Compounds

Molecule 1 - RECOMBINATION PROTEIN RECR
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDEST17
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RECR, DR_0198
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 243230
    Strain: R1
 
Molecule 2 - DNA REPAIR PROTEIN RECO
    Chains: E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDEST17
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RECO, DR_0819
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 243230
    Strain: R1
    Synonym: RECOMBINATION PROTEIN O

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric/Biological Unit (1, 6)
No.NameCountTypeFull Name
1ZN6Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:57 , CYS A:60 , CYS A:69 , CYS A:72BINDING SITE FOR RESIDUE ZN A 301
2AC2SOFTWARECYS B:57 , CYS B:60 , CYS B:69 , CYS B:72BINDING SITE FOR RESIDUE ZN B 301
3AC3SOFTWARECYS C:57 , CYS C:60 , CYS C:69 , CYS C:72BINDING SITE FOR RESIDUE ZN C 301
4AC4SOFTWARECYS D:57 , CYS D:60 , CYS D:69 , CYS D:72BINDING SITE FOR RESIDUE ZN D 301
5AC5SOFTWARECYS E:153 , CYS E:156 , CYS E:173 , CYS E:176BINDING SITE FOR RESIDUE ZN E 301
6AC6SOFTWARECYS F:153 , CYS F:156 , CYS F:173 , CYS F:176BINDING SITE FOR RESIDUE ZN F 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JCV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JCV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JCV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JCV)

(-) Exons   (0, 0)

(no "Exon" information available for 4JCV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee......ee....hhhhhh......eeeee.hhhhhhhhhhh.....eeee................hhhhhhhhh....eeee....hhhhhhhhhhhhhhhh....eeee.........hhhhhhhhhhhhhhhh.eeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jcv A   2 KYPPSLVSLIRELSRLPGIGPASAQALAFHLFEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADPSRDQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGMEVILATGTTVEGDATALYLQRLLEPLGAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQTVS 197
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191      


Chain B from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee......ee....hhhhhh......eeeee.hhhhhhhhhhh.....eeee................hhhhhhhhh....eeee....hhhhhhhhhhhhhhhh....eeee.........hhhhhhhhhhhhhhhh.eeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jcv B   2 KYPPSLVSLIRELSRLPGIGPASAQALAFHLFEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADPSRDQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGMEVILATGTTVEGDATALYLQRLLEPLGAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQTVS 197
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191      


Chain C from PDB  Type:PROTEIN  Length:191
                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..........................eeeee.hhhhhhhhhhh.....eeee.................hhhhhhhh....eeeee...hhhhhhhhhhhhhhhh....eeee.........hhhhhhhhhhhhhhhh.ee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jcv C   9 SLIRELSRLPGIGPASAQALAFHLFEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADPSRDQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGMEVILATGTTVEGDATALYLQRLLEPLGAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQTVSKP 199
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198 


Chain D from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..........................eeeee.hhhhhhhhhhh.....eeee.................hhhhhhhh....eeeee...hhhhhhhhhhhhhhhh....eeee.........hhhhhhhhhhhhhhhh.ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jcv D   4 PPSLVSLIRELSRLPGIGPASAQALAFHLFEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADPSRDQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGMEVILATGTTVEGDATALYLQRLLEPLGAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQTVSKP 199
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193      


Chain E from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeee...eeeeeeee..eeeeeeee........eeeeeee........eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..................ee......eehhhhh.....hhhhhhhhhh....hhhhhhh...hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jcv E   3 SRTANRSGIVIRRRVTPAGDIIVTLLTPQGKLKAIARGSSLNLFHHVGVQVYQGPHNDLASVKQAVLEGALPTLAEPERYAFAHLMAEFADALFQESEQAFDLFAASLRGVAHQPDPEWVALVMSYKLLGLAGVIPQTARCARCGAPDPEHPDPLGGQLLCSKCAALPPYPPAVLDFLRHAVRRTVRASFEQPVPSADRPALWRALEKFVTVQV 226
                                    12        22        32       |49        59        69        79        89        99     ||112       122       132       142       152       162       172       182       192       202       212       222    
                                                                40|                                                      105|                                                                                                                     
                                                                 48                                                       109                                                                                                                     


Chain F from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeee...eeeeeeee..eeeeeeee........eeeeeee........eeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..................ee......eehhhhh.....hhhhhhhhhhh...hhhhhhh...hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jcv F   5 TANRSGIVIRRRVTPAGDIIVTLLTPQGKLKAIARGSSLNLFHHVGVQVYQGPHNDLASVKQAVLEGALPTLAEPERYAFAHLMAEFADALFQFSEQAFDLFAASLRGVAHQPDPEWVALVMSYKLLGLAGVIPQTARCARCGAPDPEHPDPLGGQLLCSKCAALPPYPPAVLDFLRHAVRRTVRASFEQPVPSADRPALWRALEKFVTVQVG 227
                                    14        24        34     || 51        61        71        81        91       101  ||   114       124       134       144       154       164       174       184       194       204       214       224   
                                                              40|                                                     104|                                                                                                                       
                                                               48                                                      108
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JCV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JCV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JCV)

(-) Gene Ontology  (6, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RECR_DEIRA | Q9ZNA2: 1vdd 2v1c
UniProtKB/TrEMBL
        Q9RW50_DEIRA | Q9RW50: 1u5k 1w3s 2v1c

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4JCV)