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(-) Description

Title :  IMMUNE ACTIVATOR BOUND TO RECEPTOR
 
Authors :  T. Deimling, K. P. Hopfner
Date :  21 Feb 13  (Deposition) - 08 May 13  (Release) - 29 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.75
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Innate Immune Receptor, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Cavlar, T. Deimling, A. Ablasser, K. P. Hopfner, V. Hornung
Species-Specific Detection Of The Antiviral Small-Molecule Compound Cma By Sting.
Embo J. V. 32 1440 2013
PubMed-ID: 23604073  |  Reference-DOI: 10.1038/EMBOJ.2013.86

(-) Compounds

Molecule 1 - TRANSMEMBRANE PROTEIN 173
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: LIGAND BINDING DOMAIN (LBD)
    Gene: TMEM173, ERIS MITA, MPYS, STING
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: ENDOPLASMIC RETICULUM INTERFERON STIMULATOR, ERIS, MEDIATOR OF IRF3 ACTIVATION, MMITA, STIMULATOR OF INTERFERON GENES PROTEIN, MSTING

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
11K52Ligand/Ion(9-OXOACRIDIN-10(9H)-YL)ACETIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:161 , TYR A:162 , TYR A:166 , THR A:262 , PRO A:263 , GLN A:265 , THR A:266 , HOH A:508 , SER B:161 , GLY B:165 , ILE B:234 , ARG B:237 , 1K5 B:401BINDING SITE FOR RESIDUE 1K5 A 401
2AC2SOFTWARESER A:161 , GLY A:165 , ARG A:237 , 1K5 A:401 , SER B:161 , TYR B:162 , TYR B:166 , THR B:262 , PRO B:263 , THR B:266 , HOH B:510BINDING SITE FOR RESIDUE 1K5 B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JC5)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Val B:207 -Pro B:208

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JC5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JC5)

(-) Exons   (0, 0)

(no "Exon" information available for 4JC5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                           
               SCOP domains d4jc5a_ A: automated matches                                                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh...........eeeeeee..............eeeeee...eee.......eee..eeeeeee..eeeeeeeeee.hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeeeee........hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jc5 A 151 KLNVAHGLAWSYYIGYLRLILPGLQARIRMFNQLHNNMLSGAGSRRLYILFPLDCGVPDNLSVVDPNIRFRDMLPQQNIDRAGIKNRVYSNSVYEILENGQPAGVCILEYATPLQTLFAMSQDAKAGFSREDRLEQAKLFCRTLEEILEDVPESRNNCRLIVYQEPTDGNSFSLSQEVLRHIRQEEK 337
                                   160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       


Chain B from PDB  Type:PROTEIN  Length:183
                                                                                                                                                                                                                       
               SCOP domains d4jc5b_ B: automated matches                                                                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh...........eeeeee.......hhhhhh..eeeeee...eee.......eee..eeeeeee..eeeeeeeeee.hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh......eeeeee.....hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jc5 B 150 KKLNVAHGLAWSYYIGYLRLILPGLQARIRMFNQLHNNMLSGAGSRRLYILFPLDCGVPDNLSVVDPNIRFRDMLPQQNIDRAGIKNRVYSNSVYEILENGQPAGVCILEYATPLQTLFAMSQDAKAGFSREDRLEQAKLFCRTLEEILEDVPERNNCRLIVYQEPTFSLSQEVLRHIRQEEK 337
                                   159       169       179       189       199       209       219       229       239       249       259       269       279       289       299   ||  310      |324       334   
                                                                                                                                                                                   303|         317|               
                                                                                                                                                                                    305          322
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JC5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JC5)

(-) Gene Ontology  (34, 34)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        STING_MOUSE | Q3TBT3: 4kby 4kc0 4loj 4lok 4lol 4yp1

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4JC5)