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Title :   1.95 ANGSTROM CRYSTAL STRUCTURE OF GAMMA-GLUTAMYL PHOSPHATE REDUCTASE FROM SACCHAROMONOSPORA VIRIDIS.

Authors :   G. Minasov, E. V. Filippova, A. Halavaty, L. Shuvalova, O. Kiryukhina, A. Joachimiak, W. F. Anderson, Midwest Center For Structural Gen (Mcsg)

Date :   19 Feb 13 (Deposition) - 20 Mar 13 (Release) - 20 Mar 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.95

Chains :   Asym./Biol. Unit : A,B

Keywords :   Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Gamma-Glutamyl Phosphate Reductase, Nad(P), Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Minasov, E. V. Filippova, A. Halavaty, L. Shuvalova, O. Kiryukhina M. Endres, A. Joachimiak, W. F. Anderson, Midwest Center For Structural Genomics (Mcsg)
1. 95 Angstrom Crystal Structure Of Gamma-Glutamyl Phosphate Reductase From Saccharomonospora Viridis.
To Be Published
PubMed: search

Molecule 1 - GAMMA-GLUTAMYL PHOSPHATE REDUCTASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG68
	Expression System Strain	:	BL21(DE3) MAGIC
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	PROA, SVIR_28610
	Organism Scientific	:	SACCHAROMONOSPORA VIRIDIS
	Organism Taxid	:	471857
	Strain	:	DSM 43017

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (6, 33)

No.	Name	Count	Type	Full Name
1	BME	2	Ligand/Ion	BETA-MERCAPTOETHANOL
2	CA	10	Ligand/Ion	CALCIUM ION
3	CL	12	Ligand/Ion	CHLORIDE ION
4	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
5	MES	2	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6	MSE	6	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (25, 25)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:209 , SER A:212 , HOH A:663 , HOH A:837 , HOH A:867 , HOH A:868	BINDING SITE FOR RESIDUE CA A 501
02	AC2	SOFTWARE	ALA A:273 , GLU A:277 , HOH A:627 , HOH A:679 , HOH A:776	BINDING SITE FOR RESIDUE CA A 502
03	AC3	SOFTWARE	GLU A:219 , HOH A:924 , HOH A:925	BINDING SITE FOR RESIDUE CA A 503
04	AC4	SOFTWARE	HOH A:827 , HOH A:830 , HOH A:851 , HOH A:899 , HOH A:900 , HOH A:939 , HOH A:961	BINDING SITE FOR RESIDUE CA A 504
05	AC5	SOFTWARE	GLY A:25 , HOH A:713 , HOH A:744 , HOH A:946	BINDING SITE FOR RESIDUE CA A 505
06	AC6	SOFTWARE	HOH A:721 , HOH A:780 , HOH A:952 , HOH A:953 , HOH A:954	BINDING SITE FOR RESIDUE CA A 506
07	AC7	SOFTWARE	ARG A:149 , SER A:152	BINDING SITE FOR RESIDUE CL A 507
08	AC8	SOFTWARE	LEU A:197 , PRO A:198 , ASP A:199	BINDING SITE FOR RESIDUE CL A 508
09	AC9	SOFTWARE	PRO A:27 , ASP A:28 , ARG A:98 , HOH A:661	BINDING SITE FOR RESIDUE CL A 509
10	BC1	SOFTWARE	ASN A:124 , GLY A:208 , THR A:213 , HOH A:622	BINDING SITE FOR RESIDUE CL A 510
11	BC2	SOFTWARE	ARG A:160 , ARG A:329 , HOH A:616 , HOH A:696 , HOH A:844	BINDING SITE FOR RESIDUE CL A 512
12	BC3	SOFTWARE	ASN A:263 , ARG A:369 , ASP A:372 , LYS A:375	BINDING SITE FOR RESIDUE CL A 513
13	BC4	SOFTWARE	ARG A:369 , HOH A:792	BINDING SITE FOR RESIDUE CL A 514
14	BC5	SOFTWARE	VAL A:261 , CYS A:262 , ASN A:263 , HOH A:792	BINDING SITE FOR RESIDUE BME A 515
15	BC6	SOFTWARE	TYR A:125 , GLU A:126 , ARG A:128 , ARG A:207	BINDING SITE FOR RESIDUE EDO A 516
16	BC7	SOFTWARE	ALA A:44 , HIS A:45 , ASP A:47 , ALA A:48 , ALA A:325 , GLU A:352 , HOH A:616 , HOH A:794	BINDING SITE FOR RESIDUE MES A 517
17	BC8	SOFTWARE	ASP B:244 , ASP B:246 , HOH B:726	BINDING SITE FOR RESIDUE CA B 501
18	BC9	SOFTWARE	ALA B:273 , GLU B:277 , HOH B:743 , HOH B:768 , HOH B:769	BINDING SITE FOR RESIDUE CA B 502
19	CC1	SOFTWARE	HOH B:774 , HOH B:813	BINDING SITE FOR RESIDUE CA B 503
20	CC2	SOFTWARE	GLU B:284 , GLU B:288 , HOH B:772 , HOH B:773 , HOH B:812	BINDING SITE FOR RESIDUE CA B 504
21	CC3	SOFTWARE	ASN B:124 , GLY B:208 , THR B:213 , HOH B:677 , HOH B:818	BINDING SITE FOR RESIDUE CL B 505
22	CC4	SOFTWARE	ASN B:263 , ARG B:369 , ASP B:372 , LYS B:375	BINDING SITE FOR RESIDUE CL B 506
23	CC5	SOFTWARE	PRO B:27 , ASP B:28 , ARG B:98 , HOH B:701	BINDING SITE FOR RESIDUE CL B 508
24	CC6	SOFTWARE	VAL B:261 , CYS B:262 , ASN B:263	BINDING SITE FOR RESIDUE BME B 509
25	CC7	SOFTWARE	ALA B:44 , HIS B:45 , ASP B:47 , ALA B:48 , ALA B:325 , ARG B:348 , GLU B:352 , HOH B:618 , HOH B:646	BINDING SITE FOR RESIDUE MES B 510

(no "SS Bond" information available for 4JBE)

Asymmetric/Biological Unit

No.	Residues
1	Pro A:296	-	Pro A:297
2	Pro B:296	-	Pro B:297

(no "SAP(SNP)/Variant" information available for 4JBE)

(no "PROSITE Motif" information available for 4JBE)

(no "Exon" information available for 4JBE)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:411
                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains d4jbea_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhhhhhhh.....eeeeeee...eeeeeeeee..eeeeee..hhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhhhhh..hhh.eee.....hhhhhhhh.......eeee...hhhhhhhhhhhhhh..eee......eeeee....hhhhhhhhhhhh.........eeeeeee..hhhhhhhhhhhhhhhh..eee..........hhhhhhhhh.eeeeeee.hhhhhhhhhhhhh...eeeee..hhhhhhhhhhhh...eeee..hhhhhhhhhhhh..................hhhh.eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jbe A   3 NEVAKAVEECARAAKSAAPSLSGAPDTAIDAALESmADRLLAHRDAVLAANAEDIAKAEAGGmSAGLLDRLTITESRLTDmADQLRLLAGAPHPQRTVELSTLDGGLRLVERRRPVGVIGANYEARPNVTVDVASQLVKSRNAGVLRTGSAALKSAQRLLEVVIRPALTDSGIDANVVQLVPRPEREAAGALVRLPDLVPLVILRGSGESTRALALEAAQHGVRTLAHADGGGVLYVDEKADRDTVRSLVVNSLDRLGVCNRLNLLLIHDAVYEEFWPVVSEALAERGVSPSLPPYDHPIGYEWALDSEREATVTVARVDGVAEAVRIANEETSGLAAGIATEDARAAEEFFDGYQGTGVFWNAPTRLLDGFKLLGVPETGINLDKVPGPRGPVTYPDLYVRQYAVLPVER 413
                                    12        22        32     |  42        52        62  |     72        82|       92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412 
                                                              38-MSE                     65-MSE            83-MSE

Chain B from PDB  Type:PROTEIN  Length:412
                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4jbeb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhhhhhhh.....eeeeeee...eeeeeeeee..eeeee...hhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhhhhhhh..hhh.eee......hhhhhh........eeee...hhhhhhhhhhhhhh..eee......eeeee....hhhhhhhhhhhh.........eeeeeee..hhhhhhhhhhhhhhhh..eee..........hhhhhhhhh.eeeeeee.hhhhhhhhhhhhh...eeeee..hhhhhhhhhhhh...eeee..hhhhhhhhhhhh..................hhhh.eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jbe B   2 TNEVAKAVEECARAAKSAAPSLSGAPDTAIDAALESmADRLLAHRDAVLAANAEDIAKAEAGGmSAGLLDRLTITESRLTDmADQLRLLAGAPHPQRTVELSTLDGGLRLVERRRPVGVIGANYEARPNVTVDVASQLVKSRNAGVLRTGSAALKSAQRLLEVVIRPALTDSGIDANVVQLVPRPEREAAGALVRLPDLVPLVILRGSGESTRALALEAAQHGVRTLAHADGGGVLYVDEKADRDTVRSLVVNSLDRLGVCNRLNLLLIHDAVYEEFWPVVSEALAERGVSPSLPPYDHPIGYEWALDSEREATVTVARVDGVAEAVRIANEETSGLAAGIATEDARAAEEFFDGYQGTGVFWNAPTRLLDGFKLLGVPETGINLDKVPGPRGPVTYPDLYVRQYAVLPVER 413
                                    11        21        31      | 41        51        61   |    71        81 |      91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411  
                                                               38-MSE                     65-MSE            83-MSE

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	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: ALDH-like (168)

Superfamily: ALDH-like (168)

Family: automated matches (88)

Protein domain: automated matches (88)

Saccharomonospora viridis [TaxId: 471857] (1)

1a	d4jbea_	A:
1b	d4jbeb_	B:

(no "CATH Domain" information available for 4JBE)

(no "Pfam Domain" information available for 4JBE)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Pro A:296 - Pro A:297	[ RasMol ]
		Pro B:296 - Pro B:297	[ RasMol ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 33)

Sites (25, 25)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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