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(-) Description

Title :  CRYSTAL STRUCTURE OF P. AERUGINOSA MURB IN COMPLEX WITH NADP+
 
Authors :  M. W. Chen, B. Lohkamp, R. Schnell, J. Lescar, G. Schneider
Date :  19 Feb 13  (Deposition) - 17 Jul 13  (Release) - 17 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. W. Chen, B. Lohkamp, R. Schnell, J. Lescar, G. Schneider
Substrate Channel Flexibility In Pseudomonas Aeruginosa Mur Accommodates Two Distinct Substrates.
Plos One V. 8 66936 2013
PubMed-ID: 23805286  |  Reference-DOI: 10.1371/JOURNAL.PONE.0066936

(-) Compounds

Molecule 1 - UDP-N-ACETYLENOLPYRUVOYLGLUCOSAMINE REDUCTASE
    Chains: A
    EC Number: 1.1.1.158
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PNIC28-BSA4
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MURB, PA2977
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: PAO1
    Synonym: UDP-N-ACETYLMURAMATE DEHYDROGENASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2GOL6Ligand/IonGLYCEROL
3NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:51 , GLY A:53 , GLY A:54 , GLY A:55 , SER A:56 , ASN A:57 , LEU A:58 , ILE A:117 , PRO A:118 , GLY A:119 , THR A:120 , ALA A:123 , MET A:126 , GLN A:127 , ILE A:129 , GLY A:130 , ARG A:166 , TRP A:177 , ILE A:179 , ARG A:224 , ALA A:237 , GLY A:238 , ASN A:337 , TYR A:339 , NAP A:402 , HOH A:503 , HOH A:514 , HOH A:656 , HOH A:660 , HOH A:661BINDING SITE FOR RESIDUE FAD A 401
2AC2SOFTWAREALA A:131 , TYR A:132 , ARG A:166 , ASP A:195 , TYR A:196 , ARG A:224 , LYS A:227 , LEU A:228 , SER A:239 , ASN A:243 , TYR A:264 , LYS A:272 , GLU A:335 , FAD A:401 , GOL A:407 , HOH A:504 , HOH A:509 , HOH A:528 , HOH A:530 , HOH A:563 , HOH A:602 , HOH A:615 , HOH A:616 , HOH A:633 , HOH A:652BINDING SITE FOR RESIDUE NAP A 402
3AC3SOFTWAREGLY A:269 , GLY A:282 , GLY A:283 , TRP A:284 , ASP A:323 , ARG A:327BINDING SITE FOR RESIDUE GOL A 403
4AC4SOFTWAREGLY A:207 , ILE A:208 , ALA A:209 , GLN A:312 , ALA A:315 , LEU A:316 , ARG A:319 , HOH A:579 , HOH A:628 , HOH A:645BINDING SITE FOR RESIDUE GOL A 404
5AC5SOFTWAREGLY A:110 , VAL A:134 , ASP A:138 , VAL A:139 , GLU A:190 , HIS A:193 , HOH A:582 , HOH A:614BINDING SITE FOR RESIDUE GOL A 405
6AC6SOFTWARELEU A:116 , ARG A:225 , LEU A:228 , PRO A:229 , ASP A:230 , HOH A:527 , HOH A:654 , HOH A:655BINDING SITE FOR RESIDUE GOL A 406
7AC7SOFTWAREALA A:131 , TYR A:132 , GLY A:133 , VAL A:134 , GLU A:135 , ARG A:166 , TYR A:196 , NAP A:402BINDING SITE FOR RESIDUE GOL A 407
8AC8SOFTWARESER A:80 , ASP A:81 , ARG A:314 , GLU A:318 , GLN A:321 , PRO A:334 , LEU A:338BINDING SITE FOR RESIDUE GOL A 408

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JB1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JB1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JB1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JB1)

(-) Exons   (0, 0)

(no "Exon" information available for 4JB1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:337
                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.hhhh......eeeeeeee.hhhhhhhhhhhhhhh...eeee.....ee....eeeeeeee....eeeeee...eeeeeee...hhhhhhhhhhhh....hhhhh..............ee..ee....eeeeeeee.....eeeee.hhhh.....hhhhhh...eeeeeeeeeee........hhhhhhhhhhh.....hhhhhhhhhhhhhhhhh................eehhhhhhhhhhhh....eee.....eeehhhhhhhhh.....ee..eee.......eee....hhhhhhhhhhhhhhhhhhhhh.......ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jb1 A   3 LELQEHCSLKPYNTFGIDVRARLLAHARDEADVREALALARERGLPLLVIGGGSNLLLTRDVEALVLRMASQGRRIVSDAADSVLVEAEAGEAWDPFVQWSLERGLAGLENLSLIPGTVGAAPMQNIGAYGVELKDVFDSLTALDRQDGTLREFDRQACRFGYRDSLFKQEPDRWLILRVRLRLTRRERLHLDYGPVRQRLEEEGIASPTARDVSRVICAIRREKLPDPAVLGNAGSFFKNPLVDATQAERLRQAFPDLVGYPQADGRLKLAAGWLIDKGGWKGFRDGPVGVHAQQALVLVNHGGATGAQVRALAERIQEDVRRRFGVELEPEPNLY 339
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JB1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JB1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JB1)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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  1.1.1.158
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        MURB_PSEAE | Q9HZM7: 4jay

(-) Related Entries Specified in the PDB File

4jay THE SAME PROTEIN IN A DIFFERENT CRYSTAL FORM.