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(-) Description

Title :  FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH CONSENSUS ANKYRIN REPEAT DOMAIN-(D)LEU PEPTIDE
 
Authors :  J. S. Scotti, W. Ge, M. A. Mcdonough, C. J. Schofield
Date :  18 Feb 13  (Deposition) - 19 Feb 14  (Release) - 19 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.39
Chains :  Asym./Biol. Unit :  A,S
Keywords :  Non-Heme, 2-Oxoglutarate, Dioxygenase, Oxygenase, Dna-Binding, Metal- Binding, Transcription, Helix-Loop-Helix-Beta, Dsbh, Facial Triad, Asparaginyl, Aspartyl Hydroxylase, Epigenetic Regulation, Signaling, Ard, Beta-Hydroxylation, Activator/Inhibitor, Oxidoreductase-Peptide Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. S. Scotti, W. Ge, M. A. Mcdonough, C. J. Schofield
Structure Of An Oxygenase In Complex With Substrate
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR
    Chains: A
    EC Number: 1.14.11.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: HIF1AN, FIH1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FACTOR INHIBITING HIF-1, FIH-1, HYPOXIA-INDUCIBLE FACTOR ASPARAGINE HYDROXYLASE
 
Molecule 2 - CONSENSUS ANKYRIN REPEAT DOMAIN-(D)LEU
    Chains: S
    Engineered: YES
    Other Details: SYNTHETIC PEPTIDE.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AS

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
1DLE1Mod. Amino AcidD-LEUCINE
2OGA1Ligand/IonN-OXALYLGLYCINE
3SO42Ligand/IonSULFATE ION
4ZN1Ligand/IonZINC ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:199 , ASP A:201 , HIS A:279 , OGA A:502BINDING SITE FOR RESIDUE ZN A 501
2AC2SOFTWARETYR A:145 , LEU A:188 , THR A:196 , HIS A:199 , ASP A:201 , ASN A:205 , PHE A:207 , LYS A:214 , HIS A:279 , ILE A:281 , ASN A:294 , TRP A:296 , ZN A:501 , DLE S:803BINDING SITE FOR RESIDUE OGA A 502
3AC3SOFTWAREARG A:138 , GLY A:140 , GLU A:141 , GLU A:142BINDING SITE FOR RESIDUE SO4 A 503
4AC4SOFTWARELYS A:311 , ALA A:312 , HOH A:633BINDING SITE FOR RESIDUE SO4 A 504
5AC5SOFTWARETYR A:93 , TYR A:102 , GLN A:147 , THR A:196 , HIS A:199 , ASP A:201 , GLU A:202 , GLN A:203 , ARG A:238 , TYR A:276 , TRP A:296 , ILE A:306 , TYR A:308 , GLN A:314 , ALA A:317 , ILE A:318 , ASN A:321 , MET A:325 , GLU A:328 , OGA A:502 , HOH A:606 , HOH A:617 , HOH A:619 , HOH A:667 , HOH S:901 , HOH S:902BINDING SITE FOR CHAIN S OF CONSENSUS ANKYRIN REPEAT DOMAIN-(D)LEU

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JAA)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:308 -Pro A:309

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JAA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JAA)

(-) Exons   (0, 0)

(no "Exon" information available for 4JAA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:328
                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhh......eee..ee...hhhhhhhhhh...eee.....hhhhhhhhhhhhhhhh...eeeeeee........hhhhhhhh......eeeeeeehhhhhhhhhhhhhh....eeeeeee.....hhhhhhhhhh.hhhhhhhhhhhh....eee.eeeee....eeeee....eeeeeeee..eeeeeehhhhhhhhh.......................hhhhhhh.eeeeee....eeee....eeeeee......eeeeeeee.............hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jaa A  22 ALGPAWDESQLRSYSFPTRPIPRLSQSDPRAEELIENEEPVVLTDTNLVYPALKWDLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPRSNREEMKFHEFVEKLQDIQQRGGEERLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKRGWGQLTSNLLLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWYKGAPTPKRIEYPLKAHQKVAIMRNIEKMLGEALGNPQEVGPLLNTMIKGRYN 349
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341        


Chain S from PDB  Type:PROTEIN  Length:16
                                                
               SCOP domains ---------------- SCOP domains
               CATH domains ---------------- CATH domains
               Pfam domains ---------------- Pfam domains
         Sec.struct. author .hhhhhh......... Sec.struct. author
                 SAPs(SNPs) ---------------- SAPs(SNPs)
                    PROSITE ---------------- PROSITE
                 Transcript ---------------- Transcript
                 4jaa S 791 VVKLLLEHGADVxAQD 806
                                   800  |   
                                      803-DLE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JAA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JAA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JAA)

(-) Gene Ontology  (32, 32)

Asymmetric/Biological Unit(hide GO term definitions)

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    Tyr A:308 - Pro A:309   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HIF1N_HUMAN | Q9NWT6: 1h2k 1h2l 1h2m 1h2n 1iz3 1mze 1mzf 1yci 2cgn 2cgo 2ilm 2w0x 2wa3 2wa4 2xum 2y0i 2yc0 2yde 3d8c 3kcx 3kcy 3od4 3p3n 3p3p 4ai8 4b7e 4b7k 4bio 4nr1 4z1v 4z2w 5jwk 5jwl 5jwp

(-) Related Entries Specified in the PDB File

1h2k 1h2l 1h2m 4b7e 4b7k