4J5J - JenaLib

Title :   CRYSTAL STRUCTURE OF MULTIDRUG RESISTANT HIV-1 PROTEASE CLINICAL ISOLATE PR20 IN COMPLEX WITH AMPRENAVIR

Authors :   C. H. Shen, I. T. Weber

Date :   08 Feb 13 (Deposition) - 15 May 13 (Release) - 05 Jun 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A,B

Keywords :   Multidrug Resistant Hiv-1 Protease Clinical Isolate Pr20, Clinical Inhibitor Amprenavir, Potent Antiviral Inhibitor Grl-0519A, Potent Antiviral Inhibitor Grl-02031, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Agniswamy, C. H. Shen, Y. F. Wang, A. K. Ghosh, K. V. Rao, C. X. Xu, J. M. Sayer, J. M. Louis, I. T. Weber
Extreme Multidrug Resistant Hiv-1 Protease With 20 Mutation Is Resistant To Novel Protease Inhibitors With P1'-Pyrrolidinone Or P2-Tris-Tetrahydrofuran.
J. Med. Chem. V. 56 4017 2013
PubMed-ID: 23590295 | Reference-DOI: 10.1021/JM400231V

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 5)

Sites (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP B:135 , GLY B:178 , PRO B:179	BINDING SITE FOR RESIDUE CL A 101
2	AC2	SOFTWARE	ASP A:25 , GLY A:27 , ALA A:28 , ASP A:29 , ASN A:30 , GLY A:48 , GLY A:49 , ILE A:50 , VAL A:82 , ASP B:125 , GLY B:127 , ALA B:128 , ASN B:130 , ILE B:132 , GLY B:148 , GLY B:149 , ILE B:150 , PRO B:181 , VAL B:182 , HOH B:501	BINDING SITE FOR RESIDUE 478 B 401
3	AC3	SOFTWARE	TRP A:6 , GLY A:40 , ARG A:41 , TRP B:142 , PRO B:144 , LYS B:145 , LYS B:155 , VAL B:156 , ARG B:157 , VAL B:177 , PRO B:179 , GLN B:192 , ILE B:193 , GLY B:194 , CL B:404 , HOH B:508 , HOH B:545	BINDING SITE FOR RESIDUE 478 B 402
4	AC4	SOFTWARE	GLU B:121	BINDING SITE FOR RESIDUE CL B 403
5	AC5	SOFTWARE	TRP A:6 , 478 B:402	BINDING SITE FOR RESIDUE CL B 404

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:99
                                                                                                                                   
               SCOP domains d4j5ja_ A: Human immunodeficiency virus type 1 protease                                             SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee......eeeeee..eeeeeee.......ee.........eeeeeee..eeeeeeeeeeeeeee..eeeeeeeee......eehhhhhhhh..eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 4j5j A   1 PQITLWKRPFVTVKVGGQLKEALLDTGADNTIFEDINLPGRWKPKMVGGIGGFLKVREYDQVPIEIAGHKVIGTVLVGPTPVNVIGRDTMTQIGATLNF  99
                                    10        20        30        40        50        60        70        80        90

Chain B from PDB  Type:PROTEIN  Length:99
                                                                                                                                   
               SCOP domains d4j5jb_ B: Human immunodeficiency virus type 1 protease                                             SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee......eeeeee..eeeeeee......eee.........eeeeeee..eeeeeeeeeeeeeee..eeeeeeeee......eehhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 4j5j B 101 PQITLWKRPFVTVKVGGQLKEALLDTGADNTIFEDINLPGRWKPKMVGGIGGFLKVREYDQVPIEIAGHKVIGTVLVGPTPVNVIGRDTMTQIGATLNF 199
                                   110       120       130       140       150       160       170       180       190

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (45, 45)

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