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(-) Description

Title :  CRYSTAL STRUCTURE OF B. THURINGIENSIS AIIA MUTANT F107W WITH N-DECANOYL-L-HOMOSERINE BOUND AT THE ACTIVE SITE
 
Authors :  C. F. Liu, D. Liu, J. Momb, P. W. Thomas, A. Lajoie, G. A. Petsko, W. Fast, D
Date :  08 Feb 13  (Deposition) - 26 Jun 13  (Release) - 26 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym./Biol. Unit :  A
Keywords :  Aiia, Lactonase, Dizinc Hydrolase, Substrate Specificity, Quorum Quenching, Beta-Hairpin Loops, N-Acyl Homoserine Lactone, Hydrolase- Hydrolase Substrate Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. F. Liu, D. Liu, J. Momb, P. W. Thomas, A. Lajoie, G. A. Petsko, W. Fast, D. Ringe
A Phenylalanine Clamp Controls Substrate Specificity In The Quorum-Quenching Metallo-Gamma-Lactonase From Bacillus Thuringiensis.
Biochemistry V. 52 1603 2013
PubMed-ID: 23387521  |  Reference-DOI: 10.1021/BI400050J

(-) Compounds

Molecule 1 - N-ACYL HOMOSERINE LACTONASE
    Chains: A
    EC Number: 3.1.1.81
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMAL
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: AIIA
    Mutation: YES
    Organism Scientific: BACILLUS THURINGIENSIS
    Organism Taxid: 1428
    Synonym: AHL-LACTONASE, HOMOSERINE LACTONE LACTONASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric/Biological Unit (3, 11)
No.NameCountTypeFull Name
11K41Ligand/IonN-DECANOYL-L-HOMOSERINE
2GOL8Ligand/IonGLYCEROL
3ZN2Ligand/IonZINC ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:108 , HIS A:109 , ASP A:191 , HIS A:235 , 1K4 A:303BINDING SITE FOR RESIDUE ZN A 301
02AC2SOFTWAREHIS A:104 , HIS A:106 , HIS A:169 , ASP A:191 , 1K4 A:303BINDING SITE FOR RESIDUE ZN A 302
03AC3SOFTWARECYS A:14 , ILE A:73 , HIS A:106 , TRP A:107 , ASP A:108 , HIS A:109 , HIS A:169 , ASP A:191 , TYR A:194 , HIS A:235 , ZN A:301 , ZN A:302 , GOL A:310 , HOH A:429BINDING SITE FOR RESIDUE 1K4 A 303
04AC4SOFTWARELEU A:30 , ARG A:89 , PHE A:246 , HOH A:441 , HOH A:472BINDING SITE FOR RESIDUE GOL A 304
05AC5SOFTWAREASN A:59 , ASN A:60 , GLU A:61 , LYS A:76 , MET A:77 , GOL A:311 , HOH A:419 , HOH A:461BINDING SITE FOR RESIDUE GOL A 305
06AC6SOFTWARETHR A:117 , HIS A:145 , ARG A:219 , LYS A:226 , HOH A:446 , HOH A:529BINDING SITE FOR RESIDUE GOL A 306
07AC7SOFTWAREALA A:115 , GLU A:152 , HOH A:413 , HOH A:433 , HOH A:447BINDING SITE FOR RESIDUE GOL A 307
08AC8SOFTWAREMET A:53 , GLU A:55 , ILE A:83 , GLY A:111 , ALA A:115 , GLU A:152 , HOH A:401 , HOH A:421 , HOH A:440 , HOH A:525BINDING SITE FOR RESIDUE GOL A 308
09AC9SOFTWAREGLU A:61 , GLY A:62 , ASN A:65 , PRO A:247 , GLU A:248 , HOH A:555BINDING SITE FOR RESIDUE GOL A 309
10BC1SOFTWAREHIS A:106 , ARG A:134 , GLU A:136 , HIS A:169 , ALA A:206 , PHE A:208 , 1K4 A:303BINDING SITE FOR RESIDUE GOL A 310
11BC2SOFTWARELYS A:76 , THR A:78 , ASP A:81 , GOL A:305 , HOH A:438 , HOH A:482 , HOH A:548BINDING SITE FOR RESIDUE GOL A 311

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J5H)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe A:246 -Pro A:247

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4J5H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4J5H)

(-) Exons   (0, 0)

(no "Exon" information available for 4J5H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:250
                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeeeee.hhh........eeeeeeeeeeeee..eeeee....hhhhh..............eeee.hhhhhhhhhhhhhh.hhhhh.eee....hhhhhhhhhhh....eeeehhhhhhhh.....hhhhh.....eeee...eeee..eeeee........eeeeeee...eeeeeeehhh.hhhhhhh.......hhhhhhhhhhhhhhhhhhhh.eeee..hhhhhh......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4j5h A   1 MTVKKLYFIPAGRCMLDHSSVNSALTPGKLLNLPVWCYLLETEEGPILVDTGMPESAVNNEGLFNGTFVEGQILPKMTEEDRIVNILKRVGYEPDDLLYIISSHLHWDHAGGNGAFTNTPIIVQRTEYEAALHREEYMKECILPHLNYKIIEGDYEVVPGVQLLYTPGHSPGHQSLFIETEQSGSVLLTIDASYTKENFEDEVPFAGFDPELALSSIKRLKEVVKKEKPIIFFGHDIEQEKSCRVFPEYI 250
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4J5H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J5H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J5H)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Phe A:246 - Pro A:247   [ RasMol ]  
 

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 Related Entries

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        AHLL_BACTU | A3FJ64: 3dha 3dhb 3dhc 4j5f 5eht

(-) Related Entries Specified in the PDB File

4j5f SAME PROTEIN WITH NO LIGAND BOUND