4J41 - JenaLib

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Biological Unit 1 (Jmol Viewer)

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Biological Unit 3 (Jmol Viewer)

Title :   THE CRYSTAL STRUCTURE OF A SECRETED PROTEIN ESXB (MUTANT P67A) FROM BACILLUS ANTHRACIS STR. STERNE

Authors :   Y. Fan, K. Tan, G. Chhor, R. Jedrzejczak, A. Joachimiak, Midwest Cente Structural Genomics (Mcsg)

Date :   06 Feb 13 (Deposition) - 20 Feb 13 (Release) - 20 Feb 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.52

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)

Keywords :   Structural Genomics, Psi-Biology, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Fan, K. Tan, G. Chhor, R. Jedrzejczak, A. Joachimiak
The Crystal Structure Of A Secreted Protein Esxb (Mutant P67A) From Bacillus Anthracis Str. Sterne
To Be Published
PubMed: search

Molecule 1 - SECRETED PROTEIN ESXB
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21(DE3)MAGIC
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	BACILLUS ANTHRACIS, BAS2036, BA_2191, GBAA_2191
	Mutation	:	YES
	Organism Common	:	ANTHRAX,ANTHRAX BACTERIUM
	Organism Scientific	:	BACILLUS ANTHRACIS
	Organism Taxid	:	260799
	Strain	:	STERNE

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:					E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 5)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	FMT	2	Ligand/Ion	FORMIC ACID
3	PEG	2	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	FMT	-1	Ligand/Ion	FORMIC ACID
3	PEG	-1	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	FMT	2	Ligand/Ion	FORMIC ACID
3	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	FMT	-1	Ligand/Ion	FORMIC ACID
3	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR B:74 , HOH B:246 , HOH B:281	BINDING SITE FOR RESIDUE ACT B 101
2	AC2	SOFTWARE	ALA C:21 , GLU C:24 , ALA C:25 , GLN C:28 , TYR C:65 , HOH C:248 , GLU D:24 , ALA D:25 , GLN D:28	BINDING SITE FOR RESIDUE PEG C 101
3	AC3	SOFTWARE	GLU C:40 , GLY C:41 , HOH C:273 , TRP D:43 , GLY D:45	BINDING SITE FOR RESIDUE FMT C 102
4	AC4	SOFTWARE	GLU B:40 , GLN D:60	BINDING SITE FOR RESIDUE FMT D 101
5	AC5	SOFTWARE	ILE E:79 , TRP F:43 , ALA F:44 , THR F:47	BINDING SITE FOR RESIDUE PEG F 101

(no "SS Bond" information available for 4J41)

(no "Cis Peptide Bond" information available for 4J41)

(no "SAP(SNP)/Variant" information available for 4J41)

(no "PROSITE Motif" information available for 4J41)

(no "Exon" information available for 4J41)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:89
                                                                                                                        
               SCOP domains d4j41a_ A: automated matches                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                  4j41 A -2 SNAMAEIKITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIAILEGISTDLKRIADKFRNT 86
                                     7        17        27        37        47        57        67        77

Chain B from PDB  Type:PROTEIN  Length:86
                                                                                                                     
               SCOP domains d4j41b_ B: automated matches                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                  4j41 B  5 KITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIAILEGISTDLKRIADKFRNTDNAY 90
                                    14        24        34        44        54        64        74        84

Chain C from PDB  Type:PROTEIN  Length:81
                                                                                                                
               SCOP domains d4j41c_ C: automated matches                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  4j41 C  5 KITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIAILEGISTDLKRIADKFRN 85
                                    14        24        34        44        54        64        74        84

Chain D from PDB  Type:PROTEIN  Length:84
                                                                                                                   
               SCOP domains d4j41d_ D: automated matches                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                  4j41 D  3 EIKITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIAILEGISTDLKRIADKFRNT 86
                                    12        22        32        42        52        62        72        82

Chain E from PDB  Type:PROTEIN  Length:81
                                                                                                                
               SCOP domains d4j41e_ E: automated matches                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                  4j41 E  5 KITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIAILEGISTDLKRIADKFRN 85
                                    14        24        34        44        54        64        74        84

Chain F from PDB  Type:PROTEIN  Length:80
                                                                                                               
               SCOP domains d4j41f_ F: automated matches                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                  4j41 F  6 ITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIAILEGISTDLKRIADKFRN 85
                                    15        25        35        45        55        65        75        85

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: All alpha proteins (14657)

Fold: Ferritin-like (533)

Superfamily: EsxAB dimer-like (17)

Family: automated matches (13)

Protein domain: automated matches (13)

Bacillus anthracis [TaxId: 260799] (8)

1a	d4j41a_	A:
1b	d4j41b_	B:
1c	d4j41c_	C:
1d	d4j41d_	D:
1e	d4j41e_	E:
1f	d4j41f_	F:

(no "CATH Domain" information available for 4J41)

(no "Pfam Domain" information available for 4J41)

Asymmetric Unit(hide GO term definitions)

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	Cis Peptide Bonds
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Biological Units
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		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

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	Q81R67_BACAN \| Q81R67
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	Q81R67_BACAN \| Q81R67	:	4iyh 4iyi 4j10 4j11 4j42 4j7j 4j7k

4iyh	SEMET-LABELED, C-TERM. HIS-TAGGED
4iyi	WILD-TYPE, C-TERM. HIS-TAGGED
4j10	SEMET-LABELED
4j11	WILD-TYPE
4j42	MUTANT Y65F RELATED ID: MCSG-APC102106 RELATED DB: TARGETTRACK

Description

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Ligands, Modified Residues, Ions (3, 5)

Sites (5, 5)

SS Bonds (0, 0)

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