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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE SHORT-CHAIN ALCOHOL DEHYDROGENASE FROM SINORHIZOBIUM MELILOTI 1021 (TARGET NYSGRC-011708)
 
Authors :  P. Sampathkumar, A. Gizzi, M. Ahmed, N. Banu, R. Bhosle, J. Bonanno, S. C S. Chowdhury, A. Fiser, A. S. Glenn, J. Hammonds, B. Hillerich, K. Khaf J. Lafleur, J. D. Love, M. Stead, R. Seidel, R. Toro, S. C. Almo, New Yor Structural Genomics Research Consortium (Nysgrc)
Date :  04 Feb 13  (Deposition) - 01 May 13  (Release) - 01 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Short-Chain Dehydrogenase, Structural Genomics, Nysgrc, Psi-Biology, New York Structural Genomics Research Consortium, Dehydrogenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Sampathkumar, A. Gizzi, M. Ahmed, N. Banu, R. Bhosle, J. Bonanno, S. Chamala, S. Chowdhury, A. Fiser, A. S. Glenn, J. Hammonds, B. Hillerich, K. Khafizov, J. Lafleur, J. D. Love, M. Stead, R. Seidel, R. Toro, S. C. Almo, New York Structural Genomics Research Consortium (Nysgrc)
Crystal Structure Of A Putative Short-Chain Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 (Target Nysgrc-011708)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SHORT CHAIN ALCOHOL DEHYDROGENASE-RELATED DEHYDROGENASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSGC-HIS
    Expression System Strain: BL21(DE3) CODONPLUS RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RA0207, SMA0389
    Organism Common: ENSIFER MELILOTI
    Organism Scientific: SINORHIZOBIUM MELILOTI
    Organism Taxid: 266834
    Strain: 1021

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 10)

Asymmetric Unit (4, 10)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2EDO5Ligand/Ion1,2-ETHANEDIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
4NA1Ligand/IonSODIUM ION
Biological Unit 1 (3, 36)
No.NameCountTypeFull Name
11PE4Ligand/IonPENTAETHYLENE GLYCOL
2EDO20Ligand/Ion1,2-ETHANEDIOL
3MSE12Mod. Amino AcidSELENOMETHIONINE
4NA-1Ligand/IonSODIUM ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:150 , HIS A:243 , CYS A:244 , EDO A:304BINDING SITE FOR RESIDUE EDO A 301
2AC2SOFTWARESER A:149 , TYR A:150 , ARG A:171 , HOH A:463BINDING SITE FOR RESIDUE EDO A 302
3AC3SOFTWARESER A:146 , LEU A:147 , PRO A:189 , GLY A:190BINDING SITE FOR RESIDUE EDO A 303
4AC4SOFTWAREARG A:171 , GLY A:242 , HIS A:243 , PRO A:246 , EDO A:301BINDING SITE FOR RESIDUE EDO A 304
5AC5SOFTWAREGLY A:139 , ASN A:181 , ARG A:183BINDING SITE FOR RESIDUE EDO A 305
6AC6SOFTWARETYR A:251 , SER A:254 , HOH A:429 , HOH A:430BINDING SITE FOR RESIDUE NA A 306
7AC7SOFTWAREGLU A:98 , ASN A:99 , TYR A:159 , TYR A:191 , TYR A:201 , TRP A:206 , MSE A:210 , LYS A:213 , ILE A:255BINDING SITE FOR RESIDUE 1PE A 307

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4J2H)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:252
                                                                                                                                                                                                                                                                                            
               SCOP domains d4j2ha_ A: automated matches                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee..hhhhh.hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh.....eeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4j2h A   4 PIFDLSGRRALVTGASRGIGQSIAVALAEAGAHVAVTARTVEGLAETRALIEKTGRRAVALAQDVRDVEACASVTRAAAEGLGGLDILVNNAGFENVRPSFDVDEALWDTIVSTNLKGAFFCAQAAGRImADANGGAIVNLCSLTSYVGIPTAVPYGASKSGLLGVTRALATEWAAHNIRVNAIAPGYFRTAmTAGFYEDEDWQSRmLEKIPQRRFGKESDIGGVAVFLCSDAAAYITGHCIPADGGYLASI 255
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193  |    203      |213       223       233       243       253  
                                                                                                                                                           133-MSE                                                        196-MSE       210-MSE
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4J2H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4J2H)

(-) Gene Ontology  (2, 2)

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