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(-) Description

Title :  THE C145A MUTANT OF THE AMIDASE FROM NESTERENKONIA SP. AN1 IN COMPLEX WITH BUTYRAMIDE
 
Authors :  S. W. Kimani, B. T. Sewell
Date :  30 Jan 13  (Deposition) - 12 Feb 14  (Release) - 12 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.44
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Butyramide, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. W. Kimani, R. Hunter, M. Vlok, J. Watermeyer, B. T. Sewell
Covalent Modifications Of The Active Site Cysteine Occur As A Result Of Mutating The Glutamate Of The Catalytic Triad I The Amidase From Nesterenkonia Sp.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - AMIDASE
    Chains: A
    EC Number: 3.5.1.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: NIT2
    Mutation: YES
    Organism Scientific: NESTERENKONIA SP. 10004
    Organism Taxid: 501897
    Strain: AN1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1BMD1Ligand/IonBUTYRAMIDE
2PEG3Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1BMD2Ligand/IonBUTYRAMIDE
2PEG6Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:65 , PRO A:86 , GLU A:97 , SER A:108 , HOH A:405BINDING SITE FOR RESIDUE PEG A 301
2AC2SOFTWAREGLN A:7 , HIS A:8 , ARG A:28 , GLN A:91 , GLY A:230 , HOH A:495 , HOH A:595BINDING SITE FOR RESIDUE PEG A 302
3AC3SOFTWAREGLU A:118 , ALA A:121 , HOH A:512 , HOH A:518BINDING SITE FOR RESIDUE PEG A 303
4AC4SOFTWAREGLU A:41 , TYR A:47 , LYS A:111 , TYR A:115 , GLU A:119 , ALA A:145 , TYR A:146 , GLU A:149 , ALA A:170BINDING SITE FOR RESIDUE BMD A 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IZS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IZS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeee......hhhhhhhhhhhhhhhhhhh...eee...hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee.............eeeee.....eeeeee....hhhhhhhhh........eeee..eeeee.hhhhhhhhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhhh.eeeee..eeee..eeee...eee.....eeee.....eeeeeee..hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4izs A  -7 GLVPRGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQICAQVSAEQVDAARSRLRGIARDRGIALVWSLPGPEGPEQRGITAELADEHGEVLASYQKVQLYGPEEKAAFVPGEQPPPVLSWGGRQLSLLVAYDVEFPEMVRAAAARGAQLVLVPTALAGDETSVPGILLPARAVENGITLAYANHCGPEGGLVFDGGSVVVGPAGQPLGELGVEPGLLVVDLPADYLQDRRAELHRNWL 263
                                     2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232    || 252       262 
                                                                                                                                                                                                                                                                              237|               
                                                                                                                                                                                                                                                                               248
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IZS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IZS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IZS)

(-) Gene Ontology  (3, 3)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        D0VWZ1_9MICC | D0VWZ1: 3hkx 4izt 4izu 4izv 4izw

(-) Related Entries Specified in the PDB File

3hkx THE CRYSTAL STRUCTURE OF THE WILD TYPE AMIDASE FROM NESTERENKONIA AN1 SPECIES
4izt
4izu
4izv
4izw