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(-) Description

Title :  CRYSTAL STRUCTURE AND MECHANISM OF ACTIVATION OF TBK1
 
Authors :  D. Panne, A. Larabi
Date :  24 Jan 13  (Deposition) - 13 Mar 13  (Release) - 22 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.61
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Kinase, Atp Binding, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Larabi, J. M. Devos, S. L. Ng, M. H. Nanao, A. Round, T. Maniatis, D. Panne
Crystal Structure And Mechanism Of Activation Of Tank-Binding Kinase 1.
Cell Rep V. 3 734 2013
PubMed-ID: 23453971  |  Reference-DOI: 10.1016/J.CELREP.2013.01.034

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE TBK1
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Gene: NAK, TBK1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NF-KAPPA-B-ACTIVATING KINASE, T2K, TANK-BINDING KINASE 1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
11H41Ligand/IonN-{3-[(5-CYCLOPROPYL-2-{[3-(2-OXOPYRROLIDIN-1-YL)PHENYL]AMINO}PYRIMIDIN-4-YL)AMINO]PROPYL}CYCLOBUTANECARBOXAMIDE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
11H42Ligand/IonN-{3-[(5-CYCLOPROPYL-2-{[3-(2-OXOPYRROLIDIN-1-YL)PHENYL]AMINO}PYRIMIDIN-4-YL)AMINO]PROPYL}CYCLOBUTANECARBOXAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:15 , GLY A:16 , VAL A:23 , ARG A:25 , VAL A:68 , MET A:86 , GLU A:87 , PHE A:88 , CYS A:89 , PRO A:90 , GLY A:92 , MET A:142 , THR A:156 , ASP A:157BINDING SITE FOR RESIDUE 1H4 A 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IWO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IWO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IWO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IWO)

(-) Exons   (0, 0)

(no "Exon" information available for 4IWO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:629
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeeeee...eeeeeeee.....eeeeeee.........hhhhhhhhhhhhh.......eeeeee......eeeee......hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..........eeeee.....eeeee..........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...ee.....hhhhhhhhhhhhhh.....eee........eee.........hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh.eeeeeee....eeeeeee....hhhhhhhhhhhhhh......eeee..eee...................eeee........................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iwo A  -2 GAMGQSTSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRDIKPGNIMRVIGEDGQSVYKLTDFGAARELGTEEYLHPDMYEGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHRMVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSREPLNTIGLIYEKISLPKVHPRYDLDGDASMAKAITGVVCYACRIASTLLLYQELMRKGIRWLIELIKDDYNETVHKKTEVVITLDFCIRNIEKTVKVYAAELGEISDIHTKLLRLSSSQGTIETSLQDIDSRLSPGGSLADAWAHQEGTHPKDRNVEKLQVLLNCMTEIYYQFKKDKAERRLAYNEEQIHKFDKQKLYYHATKAMTHFTDECVKKYEAFLNKSEEWIRKMLHLRKQLLSLTNQCFDIEEEVSKYQEYTNELQET 657
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157      |177       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479  ||   498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648         
                                                                                                                                                                                                164|        186|                                                                                                                                                                                                                                                                                        482|                                                                                                                                                                     
                                                                                                                                                                                                 175         199                                                                                                                                                                                                                                                                                         492
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IWO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IWO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IWO)

(-) Gene Ontology  (38, 38)

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  4iwo
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  TBK1_HUMAN | Q9UHD2
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  2.7.11.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TBK1_HUMAN | Q9UHD2: 4efo 4eut 4euu 4im0 4im2 4im3 4iw0 4iwp 4iwq 5eoa 5eof 5ep6

(-) Related Entries Specified in the PDB File

4iw0 4iwp 4iwq