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(-) Description

Title :  SEMET-SUBSTITUTED KLUYVEROMYCES LACTIS ALLOPHANATE HYDROLASE
 
Authors :  C. Fan, S. Xiang
Date :  17 Jan 13  (Deposition) - 19 Jun 13  (Release) - 07 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Mixed Alpha And Beta Structure, Allophanate Binding, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Fan, Z. Li, H. Yin, S. Xiang
Structure And Function Of Allophanate Hydrolase.
J. Biol. Chem. V. 288 21422 2013
PubMed-ID: 23754281  |  Reference-DOI: 10.1074/JBC.M113.453837

(-) Compounds

Molecule 1 - ALLOPHANATE HYDROLASE
    Chains: A, B
    EC Number: 3.5.1.54
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1-621
    Gene: KLLA0E08119G, KLLA0_E08119G
    Organism Common: YEAST
    Organism Scientific: KLUYVEROMYCES LACTIS
    Organism Taxid: 28985
    Synonym: KLLA0E08119P

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric/Biological Unit (3, 7)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE5Mod. Amino AcidSELENOMETHIONINE
3TAR1Ligand/IonD(-)-TARTARIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:127 , GLY A:129 , ASP A:173 , THR A:174 , ALA A:175 , GLY A:176 , SER A:177 , ARG A:313BINDING SITE FOR RESIDUE TAR A 701
2AC2SOFTWAREALA B:127 , GLY B:129 , LEU B:130 , SER B:153 , THR B:174 , ALA B:175 , GLY B:176 , SER B:177 , ARG B:313 , HOH B:937 , HOH B:949BINDING SITE FOR RESIDUE GOL B 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ISS)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Gly A:152 -Ser A:153
2Glu A:567 -Pro A:568
3Ala B:38 -Pro B:39
4Gly B:152 -Ser B:153
5Asp B:540 -Gly B:541
6Glu B:567 -Pro B:568

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ISS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ISS)

(-) Exons   (0, 0)

(no "Exon" information available for 4ISS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:614
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhh........eeee.hhhhhhhhhhhhhhh...........eeeee.............hhhhh......hhhhhhhhhh..eeeeee..hhhhh.........................hhhhhhhhhh....eeeeee.....hhhhhh...eeee...................eeeeee.hhhhhhhhhhhhh.........................eeeee.........hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhhh.hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhh.hhhhhhhh.....hhhh.eeeeeeeeee.....eeeeeeeee..hhhhhhhhhhhhhhhhh........................hhhhh.eeeeee.........hhhhhhhh..eeee.......eeeee.........eeeee...........eeeeee..hhhhhhh.....eeeeeee.....eeeeeee..hhhhh...ee.hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iss A   1 mESTLGWSVQDWLSFHSKSTPTKSLELLENLLKSQKPAPEDPAWISLIPVEDLHHQWNILQSKSNKEELPLYGVPIAVKDNIDYKGLPTTAACPSYLYQPTRDSYVVELLRDAGAVVIGKTNLDQFATGLVGTRSPYGKTPCVFNDKYVSGGSSAGSASVVGRGIVPLSLGTDTAGSGRVPAALNNLIGLKPTKGAFSCRGVVPACKSLDCVSVFALNLSDAEIAFKVmNKPDLLEDEYSREFPKNPISQYPKDLTIAIPKEVPWFGETENPKLYTKAVASLKNTGAKIVVVDFEPLLELARCLYEGAWVAERYCATRDFLATNPPESSLDETVVNIIKGAVKFDAADAFKFEYKRQGILQKVNLLLKDIDVLCVPTCPLNPKLEEVAQEPVLVNSRQGTWTNFVNLADLAALAVPSGFRSDGLPNGITLIGKKFSDYALLDLAKRFFSVAFPNNSRTYGKFVDRRITVEDELDGPSKDTLNGVKLAVVGAHLKGLPLHWQLQKCNATYLSSPKTSNNYKLYALPKVGPVLKPGLRRVNDGTGSQIQLEVYSVPYDRFGDFIAmVPEPLGIGSVELESGEWVKSFICEEFGYTQQGTVDITKFGGFKPYIEHIQ 614
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560   |   570       580       590       600       610    
                            |                                                                                                                                                                                                                                 229-MSE                                                                                                                                                                                                                                                                                                                                        564-MSE                                              
                            1-MSE                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:612
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhh.hhhhhhhhhhhhhhh.........eeee.hhhhhhhhhhhhhhh.hhhhh.....eeeee.............hhhhh......hhhhhhhhhh..eeeeee..hhhhh.........................hhhhhhhhhh....eeeeee.....hhhhhhh..eeee...................eeeeee.hhhhhhhhhhhhh.........................eeeee.........hhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhh.hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhh.hhhhhhh...........eeeeeeeeee.....eeeeeeeee..hhhhhhhhhhhhhhhhh........................hhhhh.eeeeee..........hhhhhhh..eeee.......eeeee.........eeeee...........eeeeee..hhhhhhh.....eeeeeee.....eeeeeeehhhhhh....ee.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4iss B   3 STLGWSVQDWLSFHSKSTPTKSLELLENLLKSQKPAPEDPAWISLIPVEDLHHQWNILQSKSNKEELPLYGVPIAVKDNIDYKGLPTTAACPSYLYQPTRDSYVVELLRDAGAVVIGKTNLDQFATGLVGTRSPYGKTPCVFNDKYVSGGSSAGSASVVGRGIVPLSLGTDTAGSGRVPAALNNLIGLKPTKGAFSCRGVVPACKSLDCVSVFALNLSDAEIAFKVmNKPDLLEDEYSREFPKNPISQYPKDLTIAIPKEVPWFGETENPKLYTKAVASLKNTGAKIVVVDFEPLLELARCLYEGAWVAERYCATRDFLATNPPESSLDETVVNIIKGAVKFDAADAFKFEYKRQGILQKVNLLLKDIDVLCVPTCPLNPKLEEVAQEPVLVNSRQGTWTNFVNLADLAALAVPSGFRSDGLPNGITLIGKKFSDYALLDLAKRFFSVAFPNNSRTYGKFVDRRITVEDELDGPSKDTLNGVKLAVVGAHLKGLPLHWQLQKCNATYLSSPKTSNNYKLYALPKVGPVLKPGLRRVNDGTGSQIQLEVYSVPYDRFGDFIAmVPEPLGIGSVELESGEWVKSFICEEFGYTQQGTVDITKFGGFKPYIEHIQ 614
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222      |232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562 |     572       582       592       602       612  
                                                                                                                                                                                                                                                            229-MSE                                                                                                                                                                                                                                                                                                                                        564-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ISS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ISS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ISS)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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    Gly A:152 - Ser A:153   [ RasMol ]  
    Gly B:152 - Ser B:153   [ RasMol ]  
 

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 Related Entries

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UniProtKB/TrEMBL
        Q6CP22_KLULA | Q6CP22: 3va7 4ist 5i8i

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4ist