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(-) Description

Title :  1.85 ANGSTROM CRYSTAL STRUCTURE OF PUTATIVE SEDOHEPTULOSE-1,7 BISPHOSPHATASE FROM TOXOPLASMA GONDII
 
Authors :  G. Minasov, J. Ruan, Z. Wawrzak, A. Halavaty, L. Shuvalova, O. S. Harb, H W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)
Date :  14 Jan 13  (Deposition) - 23 Jan 13  (Release) - 23 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Fbpase/Impase/Glpx-Like Domain, Fructose-1, 6- Bisphospatase, Niaid, National Institute Of Allergy And Infectious Diseases, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Minasov, J. Ruan, Z. Wawrzak, A. Halavaty, L. Shuvalova, O. S. Harb, H. Ngo, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
1. 85 Angstrom Crystal Structure Of Putative Sedoheptulose-1, 7 Bisphosphatase From Toxoplasma Gondii.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SEDOHEPTULOSE-1,7 BISPHOSPHATASE, PUTATIVE
    Chains: A, B
    EC Number: 3.1.3.37
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCCK-N'
    Expression System Strain: BL21DE3 MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TGGT1_070070, TGME49_035700, TGVEG_061570
    Organism Scientific: TOXOPLASMA GONDII
    Organism Taxid: 508771
    Strain: ME49

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2PEG4Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:205 , LYS A:206 , LYS A:232 , TYR A:234 , HOH A:783BINDING SITE FOR RESIDUE PEG A 401
2AC2SOFTWAREASP A:316 , LYS A:319 , ARG A:320 , GLU A:323 , ALA B:327 , SER B:329BINDING SITE FOR RESIDUE PEG A 402
3AC3SOFTWAREALA B:205 , LYS B:232 , HOH B:745BINDING SITE FOR RESIDUE PEG B 401
4AC4SOFTWAREASN B:291 , GLY B:292 , GLN B:293BINDING SITE FOR RESIDUE PEG B 402
5AC5SOFTWAREARG B:83 , TRP B:137 , HOH B:658 , HOH B:720BINDING SITE FOR RESIDUE ACT B 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IR8)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu B:328 -Ser B:329

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IR8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IR8)

(-) Exons   (0, 0)

(no "Exon" information available for 4IR8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:310
                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4ir8a_ A: automated matches                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.eeeeee......ee......eeeeeeeee...hhhhh..eeeeeeeee........hhhhh....hhhhh.eeeeeee...eeeeeee..hhhhh......eeeee.....eeeee.........eeee.hhhhhhhhhhhhhhhhhhhhh..ee....hhhhhhhhhhhhh..eeee..............hhhhhhhhhhhh..eee...................eeeehhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ir8 A   7 LPSLDQLLKEQGADQTLTDLILAILDRCGKIASALQGTSLTVDVIAENLLRSWAQSSEGSAVRAVCSEEDIHLQECHKNGEFILCWDPLDGSSIIDCNWAVGSIVSIWRIGHHGVQWQGADTLIQKTGRQQVASLIVVYGPRTTGVVAVNVDAGGIVKEGTALDLEMKDNGKFICRGKPIIKPQAKIFSPANLRAAQDLPAYKQLIEFWMEKRYTLRYTGGLVPDVYQIFVKQQGVFCNPASKAAPAKLRMCFEVLAIALVVEAAGGRTSNGQKSLLDVAIEHMDHRSALCCGSADEIKRMEETFAALSG 330
                                    16        26        36        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330
                                                                 45|                                                                                                                                                                                                                                                                              
                                                                  60                                                                                                                                                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4ir8b_ B: automated matches                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.....eeehhhhhhhhhhhhhhhhhhhh.eeeeee..eeeeee......eeeeeeeee...hhhhh..eeeeeeeee........hhhhh....hhhhh.eeeeeee...eeeeeee.............eeeee.....eeeee.........eeee.hhhhhhhhhhhhhhhhhhhhh..ee....hhhhhhhhhhhhh..eeee..............hhhhhhhhhhhh..eee...................eeeehhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ir8 B   6 ALPSLDQLLKEQGADQTLTDLILAILDRCGKIASALQGTSVDKVGSVNEFGDEQLTVDVIAENLLRSWAQSSEGSAVRAVCSEEDIHLQECHKNGEFILCWDPLDGSSIIDCNWAVGSIVSIWRIGHHGVQWQGADTLIQKTGRQQVASLIVVYGPRTTGVVAVNVDAGGIVKEGTALDLEMKDNGKFICRGKPIIKPQAKIFSPANLRAAQDLPAYKQLIEFWMEKRYTLRYTGGLVPDVYQIFVKQQGVFCNPASKAAPAKLRMCFEVLAIALVVEAAGGRTSNGQKSLLDVAIEHMDHRSALCCGSADEIKRMEETFAALS 329
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IR8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IR8)

(-) Gene Ontology  (6, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Leu B:328 - Ser B:329   [ RasMol ]  
 

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