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(-) Description

Title :  RNA 8MER DUPLEX MODIFIED WITH 4-SE-URIDINE
 
Authors :  J. Sheng, J. Gan, A. Soares, Z. Huang
Date :  13 Jan 13  (Deposition) - 25 Dec 13  (Release) - 25 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Selenium Rna, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Sheng, J. Gan, A. S. Soares, J. Salon, Z. Huang
Structural Insights Of Non-Canonical U*U Pair And Hoogsteen Interaction Probed With Se Atom.
Nucleic Acids Res. V. 41 10476 2013
PubMed-ID: 24013566  |  Reference-DOI: 10.1093/NAR/GKT799

(-) Compounds

Molecule 1 - RNA (5'-R(*GP*UP*GP*(S5)P*AP*CP*AP*C)-3')
    ChainsA, B, C, D, E, F
    EngineeredYES
    FragmentUS5
    MutationYES
    Other DetailsSYNTHESIZED BY SOLID PHASE SYNTHESIZER AND PURIFIED BY HPLC
    SyntheticYES

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric/Biological Unit (1, 6)
No.NameCountTypeFull Name
1US56Mod. Nucleotide1-(5-O-PHOSPHONO-BETA-D-RIBOFURANOSYL)-4-SELANYLPYRIMIDIN-2(1H)-ONE

(-) Sites  (0, 0)

(no "Site" information available for 4IQS)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IQS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IQS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IQS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IQS)

(-) Exons   (0, 0)

(no "Exon" information available for 4IQS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:RNA  Length:8
                                      
                   4iqs A 1 GUGuACAC 8
                               |    
                               |    
                               4-US5

Chain B from PDB  Type:RNA  Length:8
                                      
                   4iqs B 1 GUGuACAC 8
                               |    
                               4-US5

Chain C from PDB  Type:RNA  Length:8
                                      
                   4iqs C 1 GUGuACAC 8
                               |    
                               4-US5

Chain D from PDB  Type:RNA  Length:8
                                      
                   4iqs D 1 GUGuACAC 8
                               |    
                               4-US5

Chain E from PDB  Type:RNA  Length:8
                                      
                   4iqs E 1 GUGuACAC 8
                               |    
                               4-US5

Chain F from PDB  Type:RNA  Length:8
                                      
                   4iqs F 1 GUGuACAC 8
                               |    
                               4-US5

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IQS)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4IQS)

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