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(-) Description

Title :  CRYSTAL STRUCTURE OF HCRA-W1266A
 
Authors :  Z. Fu, A. R. Kroken, J. T. Barbieri, J. -J. P. Kim
Date :  12 Jan 13  (Deposition) - 29 May 13  (Release) - 10 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Botulinum Neurotoxin, Receptor Binding Domain, Ganglioside Binding Loop, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Przedpelski, W. H. Tepp, A. R. Kroken, Z. Fu, J. J. Kim, E. A. Johnson, J. T. Barbieri
Enhancing The Protective Immune Response Against Botulism.
Infect. Immun. V. 81 2638 2013
PubMed-ID: 23670557  |  Reference-DOI: 10.1128/IAI.00382-13

(-) Compounds

Molecule 1 - BOTULINUM NEUROTOXIN TYPE A
    Chains: A
    EC Number: 3.4.24.69
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: DE3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ATX, BNA, BOTA, BOTULINUM NEUROTOXIN TYPE A RECEPTOR BINDING DOMAIN
    Mutation: YES
    Organism Scientific: CLOSTRIDIUM BOTULINUM
    Organism Taxid: 1491
    Synonym: BONT/A, BONTOXILYSIN-A, BOTOX, BOTULINUM NEUROTOXIN A LIGHT CHAIN, BOTULINUM NEUROTOXIN A HEAVY CHAIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:946 , TRP A:1014 , LYS A:1070 , GLN A:1091 , GLY A:1102 , GOL A:1402 , HOH A:1540BINDING SITE FOR RESIDUE GOL A 1401
2AC2SOFTWARELYS A:1070 , TYR A:1071 , GLN A:1091 , SER A:1092 , ASN A:1093 , LYS A:1098 , GLY A:1102 , ASP A:1103 , TYR A:1104 , GOL A:1401 , HOH A:1506 , HOH A:1573BINDING SITE FOR RESIDUE GOL A 1402

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:1235 -A:1280

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IQP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IQP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IQP)

(-) Exons   (0, 0)

(no "Exon" information available for 4IQP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:419
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4iqpa1 A:876-1093 automated matches                                                                                                                                                                                      d4iqpa2 A:1094-1296 automated matches                                                                                                                                                                     SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....eee......eeee...eee.......eeee......eeee.hhhhh.ee....eeeeeeee.....hhhhh...eeeeeeee..eeeeeeee..eeeeeee.....eeeeeee..............eeeeeee....eeeeee..eeeeeee......ee...eeeeeee.......eeeeeeeeee....hhhhhhhhhhhh....................eeee......eeee........eeee....eeee...eeee.......eeeee..............eeeeeeee..eeeeee.........ee.eeehhhhh.....eeee............eeee.....eeeeeeeee....eeeeeehhhhhhh.........eeee........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4iqp A  876 TSILNLRYESNHLIDLSRYASKINIGSKVNFDPIDKNQIQLFNLESSKIEVILKNAIVYNSMYENFSTSFWIRIPKYFNSISLNNEYTIINCMENNSGWKVSLNYGEIIWTLQDTQEIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKIYINGRLIDQKPISNLGNIHASNNIMFKLDGCRDTHRYIWIKYFNLFDKELNEKEIKDLYDNQSNSGILKDFWGDYLQYDKPYYMLNLYDPNKYVDVNNVGIRGYMYLKGPRGSVMTTNIYLNSSLYRGTKFIIKKYASGNKDNIVRNNDRVYINVVVKNKEYRLATNASQAGVEKILSALEIPDVGNLSQVVVMKSKNQGITNKCKMNLQDNNGNDIGFIGFHQFNNIAKLVASNAYNRQIRSSRTLGCSWEFIPVDDGWGERPL 1296
                                   885       895       905       915       925       935       945       955       965       975       985       995      1005      1015      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205      1215      1225 ||   1236      1246      1256      1266    ||1277      1287         
                                                                                                                                                                                                                                                                                                                                                                                        1227|                                      1271|                       
                                                                                                                                                                                                                                                                                                                                                                                         1229                                       1273
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IQP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IQP)

(-) Gene Ontology  (22, 22)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BXA1_CLOBO | P10845: 1uee 1xtf 1xtg 2ilp 2ima 2imb 2imc 2ise 2isg 2ish 2nyy 2nz9 2vu9 2vua 2w2d 3bok 3bon 3boo 3bta 3bwi 3c88 3c89 3c8a 3c8b 3dda 3ddb 3ds9 3fuo 3v0a 3v0b 3v0c 3zur 3zus 4ej5 4el4 4elc 4hev 4jra 4zjx 5jlv 5jmc 5tpb 5tpc 5vgv 5vgx

(-) Related Entries Specified in the PDB File

3fuo W1266A MUTANT