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(-) Description

Title :  STRUCTURE OF POLIIIALPHA-TAUC-DNA COMPLEX SUGGESTS AN ATOMIC MODEL OF THE REPLISOME
 
Authors :  B. Liu, J. Lin, T. Steitz
Date :  11 Jan 13  (Deposition) - 13 Mar 13  (Release) - 19 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Keywords :  Polymerase, Alpha Subunit, Tauc Subunit, Dna Replication, Dna- Directed Dna Polymerase, Nucleotidyltransferase, Transferase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Liu, J. Lin, T. A. Steitz
Structure Of Poliiialpha-Tauc-Dna Complex Suggests An Atomi Model Of The Replisome
Structure V. 21 658 2013
PubMed-ID: 23478062  |  Reference-DOI: 10.1016/J.STR.2013.02.002
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'- D(P*CP*GP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*A)-3')
    Chains: E, G, K
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: DNA SUBSTRATE PRIMER STRAND
    Synthetic: YES
 
Molecule 2 - DNA (5'- D(*TP*TP*TP*TP*TP*TP*TP*GP*TP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP* GP*TP*TP*TP*CP*G)-3')
    Chains: F, H, J, L
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: DNA SUBSTRATE TEMPLATE STRAND
    Synthetic: YES
 
Molecule 3 - DNA (5'- D(P*CP*GP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*(DOC) )-3')
    Chains: I
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: DNA SUBSTRATE PRIMER STRAND
    Synthetic: YES
 
Molecule 4 - DNA POLYMERASE III SUBUNIT ALPHA
    Chains: A, B, C, D
    EC Number: 2.7.7.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: DNA POLYMERASE III SUBUNIT ALPHA
    Gene: DNAE
    Organism Scientific: THERMUS AQUATICUS
    Organism Taxid: 271
 
Molecule 5 - C-TERMINAL DOMAIN OF THE DNA POLYMERASE III SUBUNIT TAU
    Chains: M, N, O, P
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: THERMUS AQUATICUS
    Organism Taxid: 271

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric/Biological Unit : ABCDEFGHIJKLMNOP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 17)

Asymmetric/Biological Unit (3, 17)
No.NameCountTypeFull Name
1DOC1Mod. Nucleotide2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE
2MG4Ligand/IonMAGNESIUM ION
3ZN12Ligand/IonZINC ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:72 , HIS A:95 , CYS A:145 , ZN A:1303BINDING SITE FOR RESIDUE ZN A 1301
02AC2SOFTWAREASP A:20 , HIS A:47 , HIS A:214BINDING SITE FOR RESIDUE ZN A 1302
03AC3SOFTWAREHIS A:11 , HIS A:13 , GLU A:72 , ASP A:212 , ZN A:1301BINDING SITE FOR RESIDUE ZN A 1303
04AC4SOFTWAREASP A:463 , ASP A:465 , LYS A:616 , ASP A:618BINDING SITE FOR RESIDUE MG A 1304
05AC5SOFTWAREGLU B:72 , HIS B:95 , CYS B:145 , ASP B:212 , ZN B:1303BINDING SITE FOR RESIDUE ZN B 1301
06AC6SOFTWAREASP B:20 , HIS B:47 , HIS B:214BINDING SITE FOR RESIDUE ZN B 1302
07AC7SOFTWAREHIS B:11 , HIS B:13 , GLU B:72 , ASP B:212 , ZN B:1301BINDING SITE FOR RESIDUE ZN B 1303
08AC8SOFTWAREASP B:463 , ILE B:464 , ASP B:465 , LYS B:616 , ASP B:618BINDING SITE FOR RESIDUE MG B 1304
09AC9SOFTWAREGLU C:72 , HIS C:95 , CYS C:145 , ZN C:1303BINDING SITE FOR RESIDUE ZN C 1301
10BC1SOFTWAREASP C:20 , HIS C:47 , HIS C:214BINDING SITE FOR RESIDUE ZN C 1302
11BC2SOFTWAREHIS C:11 , HIS C:13 , GLU C:72 , ASP C:212 , ZN C:1301BINDING SITE FOR RESIDUE ZN C 1303
12BC3SOFTWAREASP C:463 , ASP C:465 , LYS C:616 , ASP C:618BINDING SITE FOR RESIDUE MG C 1304
13BC4SOFTWAREGLU D:72 , HIS D:95 , CYS D:145 , ASP D:212 , ZN D:1303BINDING SITE FOR RESIDUE ZN D 1301
14BC5SOFTWAREASP D:20 , HIS D:47 , HIS D:214BINDING SITE FOR RESIDUE ZN D 1302
15BC6SOFTWAREHIS D:11 , HIS D:13 , GLU D:72 , ASP D:212 , ZN D:1301BINDING SITE FOR RESIDUE ZN D 1303
16BC7SOFTWAREASP D:463 , ILE D:464 , ASP D:465 , LYS D:616 , MET D:617 , ASP D:618BINDING SITE FOR RESIDUE MG D 1304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IQJ)

(-) Cis Peptide Bonds  (109, 109)

Asymmetric/Biological Unit
No.Residues
1Asp A:238 -Pro A:239
2Pro A:301 -Glu A:302
3Phe A:495 -Gly A:496
4Gly A:496 -Ser A:497
5Leu A:498 -Ala A:499
6Asn A:569 -Arg A:570
7Ala A:572 -Ser A:573
8Val A:1080 -Val A:1081
9Tyr A:1086 -Glu A:1087
10Glu A:1087 -Gly A:1088
11Gly A:1144 -Val A:1145
12Gly A:1211 -Gly A:1212
13Asp B:238 -Pro B:239
14Val B:357 -Glu B:358
15His B:515 -Lys B:516
16His B:1013 -Pro B:1014
17Lys B:1057 -Pro B:1058
18Val B:1080 -Val B:1081
19Tyr B:1086 -Glu B:1087
20Glu B:1087 -Gly B:1088
21Lys B:1143 -Gly B:1144
22Gly B:1211 -Gly B:1212
23Asp C:238 -Pro C:239
24Pro C:301 -Glu C:302
25Val C:541 -Val C:542
26Tyr C:1086 -Glu C:1087
27Glu C:1087 -Gly C:1088
28Gln C:1207 -Gly C:1208
29Gly C:1211 -Gly C:1212
30Asp D:238 -Pro D:239
31Leu D:300 -Pro D:301
32Glu D:302 -Gly D:303
33Val D:1080 -Val D:1081
34Tyr D:1086 -Glu D:1087
35Glu D:1087 -Gly D:1088
36Gly D:1144 -Val D:1145
37Gly D:1211 -Gly D:1212
38Arg M:385 -Ala M:386
39Lys M:392 -Pro M:393
40Leu M:411 -Val M:412
41Gln M:440 -Phe M:441
42Leu M:450 -Glu M:451
43Leu M:455 -Ser M:456
44Glu M:488 -Asp M:489
45Ala M:494 -Glu M:495
46Glu M:495 -Glu M:496
47Glu M:498 -Asp M:499
48Asp M:499 -Pro M:500
49Arg M:505 -Arg M:506
50Arg M:519 -Lys M:520
51Ala M:523 -Pro M:524
52Pro M:524 -Glu M:525
53Ala M:526 -Glu M:527
54Glu M:527 -Glu M:528
55Pro M:529 -Val M:530
56Leu N:395 -Arg N:396
57Ala N:397 -Phe N:398
58Lys N:409 -Thr N:410
59Leu N:411 -Val N:412
60Gln N:440 -Phe N:441
61Leu N:450 -Glu N:451
62Leu N:455 -Ser N:456
63Glu N:493 -Ala N:494
64Ala N:494 -Glu N:495
65Glu N:495 -Glu N:496
66Glu N:498 -Asp N:499
67Asp N:499 -Pro N:500
68Arg N:505 -Arg N:506
69Val N:518 -Arg N:519
70Arg N:519 -Lys N:520
71Ala N:523 -Pro N:524
72Pro N:524 -Glu N:525
73Glu N:527 -Glu N:528
74Pro N:529 -Val N:530
75Arg O:385 -Ala O:386
76Lys O:392 -Pro O:393
77Leu O:395 -Arg O:396
78Arg O:396 -Ala O:397
79Ala O:397 -Phe O:398
80Leu O:411 -Val O:412
81Gln O:440 -Phe O:441
82Leu O:450 -Glu O:451
83Leu O:455 -Ser O:456
84Glu O:493 -Ala O:494
85Ala O:494 -Glu O:495
86Glu O:495 -Glu O:496
87Glu O:498 -Asp O:499
88Asp O:499 -Pro O:500
89Val O:518 -Arg O:519
90Arg O:519 -Lys O:520
91Ala O:523 -Pro O:524
92Glu O:527 -Glu O:528
93Pro O:529 -Val O:530
94Arg P:385 -Ala P:386
95Ala P:397 -Phe P:398
96Leu P:450 -Glu P:451
97Leu P:455 -Ser P:456
98Ser P:456 -Gly P:457
99Glu P:493 -Ala P:494
100Ala P:494 -Glu P:495
101Glu P:495 -Glu P:496
102Glu P:498 -Asp P:499
103Asp P:499 -Pro P:500
104Val P:518 -Arg P:519
105Arg P:519 -Lys P:520
106Ala P:523 -Pro P:524
107Pro P:524 -Glu P:525
108Glu P:527 -Glu P:528
109Pro P:529 -Val P:530

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IQJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IQJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4IQJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1164
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................hhhhhhhhhhhhh....eeee.......hhhhhhhhhh....eeeeeeeeeee........eeeeeeee.hhhhhhhhhhhhhhhhhh......eehhhhhhhh...eeee.....hhhhhhhhh.hhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhhhh...................hhhhhhhhh......hhhhhhhhhhhhh........................hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...........hhhhhh..........eeeee..hhhhhhhhhhhhhh...eeeee......hhhhhhh........hhhhhhhhh...........hhhhhhhhhhhhhhhhhhhh........eeeeeeee...hhhhhh.eee.....eee..hhhhhhhh..eeeeeeeehhhhhhhhhhhhhhhhhh...hhhhh...hhhhhhhhhh..........hhhhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhh...........hhhhhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....ee...........eee..eee.hhhhh...hhhhhhhhhhhhhhh....hhhhhhhh......hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhh.....hhhhhhhhhhhhh.....hhhhhhh......eeeeeeee......eee..ee..ee.................eeeeeee...eeeeeeeehhhhh.......eeee........hhhhhhhhhh........eeee....eee.........hhhhhhh......................hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4iqj A    5 LKFAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATAMGVKPIIGYEAYVAAESRFDRGYFHLTLLAKDFTGYQNLVRLASRAYLEGFYEKPRIDREILREHAQGLIALSGCLGAEIPQFILQDRLDLAEARLNEDLSIFGDRFFIEIQNHGLPEQKKVNQVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTTLDDPERWRFPCDEFYVKTPEEMRAMLPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPRFPLPEGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLDERALAEALARVEEKAWEELRKREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARGHGVSVGPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYVRERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPKPLQEAELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRDQEGRPVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVELDYDRLPLDDPKTFELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHHGQEPVSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKRVEEMQKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARALGIPVLPPDVNRSGFDFKVVGEEILFGLSAVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDAFGDRARLLASLEPLLRWAAETRERGRSGLVGLFAEVEEPPLVEASPLDEITMLRYEKEALGIYVSGHPVLRYPGLREVASCTIEELSEFVRELPGKPKVLLSGMVEEVRFTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVERVLAQAVWTLEEVLEAPKALEVEVDHALLDEKGVARLKSLLDEHPGSLPVYLRVLGPFGEALFALREVRGEEALGLLEAEGYRAYLVPDREVFLQGNGGGPKEEVVPF 1220
                                    14        24        34        44        54        64        74        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332     ||349       359       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       533    || 548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848       858       868       878       888       898       908       918       928       938       948       958       968       978       988       998      1008      1018      1028      1038      1048     |1070      1080      1090      1100     |1115      1125      1135      1145      1155      1165      1175    ||1186      1196      1206      1216    
                                                                                                         83|                                                                                                                                                                                                                                                   338|                   368|                                                                                                                                                  526|  538|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          1054|                                   1106|                                                                1180|                                      
                                                                                                          92                                                                                                                                                                                                                                                    346                    377                                                                                                                                                   533   544                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           1067                                    1112                                                                 1182                                      


Chain B from PDB  Type:PROTEIN  Length:1167
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................hhhhhhhhhhhhh....eeee.......hhhhhhhhhhhh..eeeeeeeeeee........eeeeeeee.hhhhhhhhhhhhhhhhhh......eehhhhhhhh...eeee.....hhhhhhhhh.hhhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhhh...eee.......hhhhhhhhhhhhhhhh....................hhhhhhhhh......hhhhhhhhhhhhhh.......................hhhhhhhhhhhhhhhhhh....hhhhhhhhhhh..hhhhhhhhh..hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh...........hhhhhh..........eeeee..hhhhhhhhhhhhh....eeeeee.hhhhhhhhhhh....hhhhhhh...........hhhhh..hhhhhhhhhhhhhh.......eeeeeeeee...hhhhh..eee.....eee..hhhhhhhh..eeeeeeeehhhhhhhhhhhhhhhhhh...hhhhh...hhhhhhhhhh..........hhhhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhh...........hhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....ee...........eee..eee.........hhhhhhhhhhhhhhh....hhhhhhhhh.....hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhh.......hhhhhhhhhhhh....hhhhhhhh......eeeeeeee.............eeee....eeeee.................eeeeeee...eeeeeeeehhhhhhh.eeeeee..........hhhhhhhhhh.eeeeeeee..........eeeeeeee..hhhhhhhh...eeeeee.................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4iqj B    5 LKFAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATAMGVKPIIGYEAYVAAESRFDRGYFHLTLLAKDFTGYQNLVRLASRAYLEGFYEKPRIDREILREHAQGLIALSGCLGAEIPQFILQDRLDLAEARLNEDLSIFGDRFFIEIQNHGLPEQKKVNQVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTTLDDPERWRFPCDEFYVKTPEEMRAMLPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPRFPLPEGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLDERALAEALARVEEKAWEELREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARGHGVSVGPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYVRERYGEDKVAQIGTASKAALKDVARVIPHKKAEELAKLIPPKPLQEAELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRDQEGRPVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVELDYDRLPLDDPKTFELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHHGQEPVSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKRVEEMQKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARALGIPVLPPDVNRSGFDFKVVGEEILFGLSAVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDAFGDRARLLASLEPLLRWAAETRERGRSGLVGLFAEVEEPPLVEASPLDEITMLRYEKEALGIYVSGHPVLRYPGLREVASCTIEELSEFVRELPGKPKVLLSGMVEEVVRKPTGMMARFTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVERVLAQAVWTLEEVLEAPKALEVEVDHALLDEKGVARLKSLLDEHPGSLPVYLRVLGPFGEALFALREVRVGEEALGLLEAEGYRAYLVPDREVFLQGNGGGPKEEVVPF 1220
                                    14        24        34        44        54        64        74        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332     ||349       359      |379       389       399       409       419       429       439       449       459       469       479       489    || 503      |515       525||     545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       775       785       795       805       815       825       835       845       855       865       875       885       895       905       915       925       935       945       955       965       975       985       995      1005      1015      1025      1035      1045      1055   || 1068      1078      1088      1098      1113      1123      1133      1143      1153      1163      1173      1183      1193      1203      1213       
                                                                                                         83|                                                                                                                                                                                                                                                   338|                 366|                                                                                                                  494|        510|          526|   538|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               1059|                                       1106|                                                                                                            
                                                                                                          92                                                                                                                                                                                                                                                    346                  377                                                                                                                   499         513           532    544                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                1063                                        1112                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:1166
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................hhhhhhhhhhhhh....eeee.......hhhhhhhhhhhhh.eeeeeeeeeee........eeeeeeee.hhhhhhhhhhhhhhhhhh......eehhhhhhhh...eeee.....hhhhhhhhh.hhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhhh..eee.......hhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......................hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh...........hhhhhh..........eeeee..hhhhhhhhhhhhhh...ee......hhhhhhhhhhhhh.hhhhhhhhhhh.........................hhhhhhhhhhhhh.............eeee...hhhhh..eee.....eee..hhhhhhhh...eeeeeeehhhhhhhhhhhhhhhhhh...hhhhh...hhhhhhhhhh..........hhhhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhh...........hhhhhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....ee...........eee..eee.hhhhh...hhhhhhhhhhhhhhh....hhhhhhhhh.....hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhh...........hhhhhhh....hhhhhhhh......eeeee........eeee..eeee...hhhhhh...........eeeeee....eeeeeeehhhhh...ee.eee.....hhhhhhhhhhhhhhh.eeeee.ee..ee..ee........ee..hhhhhhh....ee..ee............hhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4iqj C    5 LKFAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATAMGVKPIIGYEAYVAAESRFDRGYFHLTLLAKDFTGYQNLVRLASRAYLEGFYEKPRIDREILREHAQGLIALSGCLGAEIPQFILQDRLDLAEARLNEDLSIFGDRFFIEIQNHGLPEQKKVNQVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTTLDDPERWRFPCDEFYVKTPEEMRAMLPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPRFPLPEGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLDERALAEALARVEEKAWEELRKEWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARGHGVSVGPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYVRERYGEDKVAQIGTFASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLQEAVVPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRDQEGRPVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVELDYDRLPLDDPKTFELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHHGQEPVSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKRVEEMQKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARALGIPVLPPDVNRSGFDFKVVGEEILFGLSAVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDAFGDRARLLASLEPLLRWAAETRERGRSGLVGVEEPPLVEASPLDEITMLRYEKEALGIYVSGHPVLRYPGLREVASCTIEELSEFVRELPGKPKVLLSGMVEEVRFTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVERVLAQAVWTLEEVLEAPKALEVEVDHALLDEKGVARLKSLLDEHPGSLPVYLRVLGPFGEALFALREVRVGEEALGLLEAEGYRAYLVPDREVFLQGNGGGPKEEVVPF 1220
                                    14        24        34        44        54        64        74        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332     ||349       359       378       388       398       408       418       428       438       448       458       468       478       488      |501       511       521       531      |543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       853       863       873       883       893       903       913       923       933       943       953       963       973   ||  987       997      1007      1017      1027      1037      1047      1069      1079      1089      1099      1114      1124      1134      1144      1154      1164      1174      1184      1194      1204      1214      
                                                                                                         83|                                                                                                                                                                                                                                                   338|                  367|                                                                                                                   495|                                    538|                                                                                                                                                                                                                                                                                                                                                                                                                                                 977|                                                                    1054|                                   1106|                                                                                                            
                                                                                                          92                                                                                                                                                                                                                                                    346                   377                                                                                                                    499                                     541                                                                                                                                                                                                                                                                                                                                                                                                                                                  982                                                                     1067                                    1112                                                                                                            


Chain D from PDB  Type:PROTEIN  Length:1185
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................hhhhhhhhhhhhh....eeee.......hhhhhhhhhhhhh.eeeeeeeeeee........eeeeeeee.hhhhhhhhhhhhhhhhhh......eehhhhhhhh...eeee.....hhhhhhhhh.hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhhhh..eee.......hhhhhhhhhhhhhhhhh...................hhhhhhhhh......hhhhhhhhhhhhh........................hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh...........................eeeee..hhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhh.hhhhhhhhhhh.........hhhhhhhh.....hhhhhhhhhhhhhhhhhh.........eeeeeeee...hhhhhh.eee.....eee..hhhhhhh....eeeeeeehhhhhhhhhhhhhhhhhh...hhhhh...hhhhhhhhhh..........hhhhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhh............hhhhhhhhhhhhh....hhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....ee...........eee..eee.hhhhh...hhhhhhhhhhhhhhh....hhhhhhhhh.....hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhhh.....hhhhhhhhhhhhh....hhhhhhhh......eeeeeeee............eeeeee..eeeeee.hhhhh..........eeeeeeee....eeeeeehhhhhhhh.eeeeee..........hhhhhhhhhh.eeeeeeeeeee....eeeeeeeeeee..hhhhhhh....eeeeee...........hhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4iqj D    5 LKFAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATAMGVKPIIGYEAYVAAESRFDRGYFHLTLLAKDFTGYQNLVRLASRAYLEGFYEKPRIDREILREHAQGLIALSGCLGAEIPQFILQDRLDLAEARLNEDLSIFGDRFFIEIQNHGLPEQKKVNQVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTTLDDPERWRFPCDEFYVKTPEEMRAMLPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPRFPLPEGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLDERALAEALARVEEKAWEELRKREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARGHGVSVGPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYVRERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLQEAIQVVPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRDQEGRPVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVELDYDRLPLDDPKTFELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHHGQEPVSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKRVEEMQKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKAHYPVEFMAALLSVERHDSDKVAEYIRDARALGIPVLPPDVNRSGFDFKVVGEEILFGLSAVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDAFGDRARLLASLEPLLRWAAETRERGRSGLVGLFAEVEEPPLVEASPLDEITMLRYEKEALGIYVSGHPVLRYPGLREVASCTIEELSEFVRELPGKPKVLLSGMVEEVVRKPTRMMARFTLSDETGALEVVVFGRAYEGVSPKLKEDIPLLVLAEVERVLAQAVWTLEEVLEAPKALEVEVDHALLDEKGVARLKSLLDEHPGSLPVYLRVLGPFGEALFALREVRVGEEALGLLEAEGYRAYLVPDREVFLQGNGGGPKEEVVPF 1220
                                    14        24        34        44        54        64        74        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332     ||349       359       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857       867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037      1047      1057  ||  1070      1080      1090      1100     |1115      1125      1135      1145      1155      1165      1175      1185      1195      1205      1215     
                                                                                                         83|                                                                                                                                                                                                                                                   338|                   368|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       1060|                                      1106|                                                                                                            
                                                                                                          92                                                                                                                                                                                                                                                    346                    377                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        1064                                       1112                                                                                                            


Chain E from PDB  Type:DNA  Length:20
                                                     
                4iqj E    1 CGAAACGACGGCCAGTGCCA   20
                                    10        20


Chain F from PDB  Type:DNA  Length:20
                                                     
                4iqj F    9 TGGCACTGGCCGTCGTTTCG   28
                                    18        28


Chain G from PDB  Type:DNA  Length:20
                                                     
                4iqj G    1 CGAAACGACGGCCAGTGCCA   20
                                    10        20


Chain H from PDB  Type:DNA  Length:27
                                                            
                4iqj H    2 TTTTTTGTGGCACTGGCCGTCGTTTCG   28
                                    11        21       


Chain I from PDB  Type:DNA  Length:21
                                                      
                4iqj I    1 CGAAACGACGGCCAGTGCCAc  101
                                    10        20|
                                              20|
                                              101-DOC


Chain J from PDB  Type:DNA  Length:23
                                                        
                4iqj J    6 TTGTGGCACTGGCCGTCGTTTCG   28
                                    15        25   


Chain K from PDB  Type:DNA  Length:20
                                                     
                4iqj K    1 CGAAACGACGGCCAGTGCCA   20
                                    10        20


Chain L from PDB  Type:DNA  Length:24
                                                         
                4iqj L    5 TTTGTGGCACTGGCCGTCGTTTCG   28
                                    14        24    


Chain M from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhh..hhhhhh....................hhhhhhhh....hhhhhhhhhhh.hhhhhh........................................hhhhhhhh.............hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4iqj M  367 HHHHHHKAGEAQDLAEGWRAFLEALKPTLRAFVREARPHLEGKTLVLRFPESKAFHHLLPLARAQFGVEELAFVLEKKSLSLEDPPWEAEEGEDPSEELRRLARLLGGRLLWVRKPKAPEAEEPVSEDGIGGNGIMPP  543
                                   376       386       396       406       416      |435       445       455||     495       505       515       525       535        
                                                                                  423|                    456|                                                        
                                                                                   433                     487                                                        


Chain N from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh..hhhhhhhhhh...............hhhhhhhh......hhhhhhhhh.hhhhhh.....................................hhhhhhh..............hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4iqj N  367 HHHHHHKAGEAQDLAEGWRAFLEALKPTLRAFVREARPHLEGKTLVLRFPESKAFHHLLPLARAQFGVEELAFVLEKKSLSPPWEAEEGEDPSEELRRLARLLGGRLLWVRKPKAPEAEEPVSEDGIGGNGIMPP  543
                                   376       386       396       406       416      |435       445       455||     498       508       518       528       538     
                                                                                  423|                    456|                                                     
                                                                                   433                     490                                                     


Chain O from PDB  Type:PROTEIN  Length:135
                                                                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh....hhhhh...................hhhhhhhh....hhhhhhhhhhh.hhhhhh.....................................hhhhhhh..............hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4iqj O  367 HHHHHHKAGEAQDLAEGWRAFLEALKPTLRAFVREARPHLEGKTLVLRFPESKAFHHLLPLARAQFGVEELAFVLEKKSLSPPWEAEEGEDPSEELRRLARLLGGRLLWVRKPKAPEAEEPVSEDGIGGNGIMPP  543
                                   376       386       396       406       416      |435       445       455||     498       508       518       528       538     
                                                                                  423|                    456|                                                     
                                                                                   433                     490                                                     


Chain P from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhh............................hhhhhhhh....hhhhhhhhhhh.hhhhhh........................................hhhhhhhhh............hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4iqj P  367 HHHHHHKAGEAQDLAEGWRAFLEALKPTLRAFVREARPHLEGKTLVLRFPESKAFHHLLPLARAQFGVEELAFVLEKKSLSGASPPWEAEEGEDPSEELRRLARLLGGRLLWVRKPKAPEAEEPVSEDGIGGNGIMPP  543
                                   376       386       396       406       416      |435       445       455   ||  495       505       515       525       535        
                                                                                  423|                       459|                                                     
                                                                                   433                        490
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IQJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IQJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IQJ)

(-) Gene Ontology  (10, 10)

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  Cis Peptide Bonds
    Ala A:572 - Ser A:573   [ RasMol ]  
    Ala M:494 - Glu M:495   [ RasMol ]  
    Ala M:523 - Pro M:524   [ RasMol ]  
    Ala M:526 - Glu M:527   [ RasMol ]  
    Ala N:397 - Phe N:398   [ RasMol ]  
    Ala N:494 - Glu N:495   [ RasMol ]  
    Ala N:523 - Pro N:524   [ RasMol ]  
    Ala O:397 - Phe O:398   [ RasMol ]  
    Ala O:494 - Glu O:495   [ RasMol ]  
    Ala O:523 - Pro O:524   [ RasMol ]  
    Ala P:397 - Phe P:398   [ RasMol ]  
    Ala P:494 - Glu P:495   [ RasMol ]  
    Ala P:523 - Pro P:524   [ RasMol ]  
    Arg M:385 - Ala M:386   [ RasMol ]  
    Arg M:505 - Arg M:506   [ RasMol ]  
    Arg M:519 - Lys M:520   [ RasMol ]  
    Arg N:505 - Arg N:506   [ RasMol ]  
    Arg N:519 - Lys N:520   [ RasMol ]  
    Arg O:385 - Ala O:386   [ RasMol ]  
    Arg O:396 - Ala O:397   [ RasMol ]  
    Arg O:519 - Lys O:520   [ RasMol ]  
    Arg P:385 - Ala P:386   [ RasMol ]  
    Arg P:519 - Lys P:520   [ RasMol ]  
    Asn A:569 - Arg A:570   [ RasMol ]  
    Asp A:238 - Pro A:239   [ RasMol ]  
    Asp B:238 - Pro B:239   [ RasMol ]  
    Asp C:238 - Pro C:239   [ RasMol ]  
    Asp D:238 - Pro D:239   [ RasMol ]  
    Asp M:499 - Pro M:500   [ RasMol ]  
    Asp N:499 - Pro N:500   [ RasMol ]  
    Asp O:499 - Pro O:500   [ RasMol ]  
    Asp P:499 - Pro P:500   [ RasMol ]  
    Gln C:1207 - Gly C:1208   [ RasMol ]  
    Gln M:440 - Phe M:441   [ RasMol ]  
    Gln N:440 - Phe N:441   [ RasMol ]  
    Gln O:440 - Phe O:441   [ RasMol ]  
    Glu A:1087 - Gly A:1088   [ RasMol ]  
    Glu B:1087 - Gly B:1088   [ RasMol ]  
    Glu C:1087 - Gly C:1088   [ RasMol ]  
    Glu D:1087 - Gly D:1088   [ RasMol ]  
    Glu D:302 - Gly D:303   [ RasMol ]  
    Glu M:488 - Asp M:489   [ RasMol ]  
    Glu M:495 - Glu M:496   [ RasMol ]  
    Glu M:498 - Asp M:499   [ RasMol ]  
    Glu M:527 - Glu M:528   [ RasMol ]  
    Glu N:493 - Ala N:494   [ RasMol ]  
    Glu N:495 - Glu N:496   [ RasMol ]  
    Glu N:498 - Asp N:499   [ RasMol ]  
    Glu N:527 - Glu N:528   [ RasMol ]  
    Glu O:493 - Ala O:494   [ RasMol ]  
    Glu O:495 - Glu O:496   [ RasMol ]  
    Glu O:498 - Asp O:499   [ RasMol ]  
    Glu O:527 - Glu O:528   [ RasMol ]  
    Glu P:493 - Ala P:494   [ RasMol ]  
    Glu P:495 - Glu P:496   [ RasMol ]  
    Glu P:498 - Asp P:499   [ RasMol ]  
    Glu P:527 - Glu P:528   [ RasMol ]  
    Gly A:1144 - Val A:1145   [ RasMol ]  
    Gly A:1211 - Gly A:1212   [ RasMol ]  
    Gly A:496 - Ser A:497   [ RasMol ]  
    Gly B:1211 - Gly B:1212   [ RasMol ]  
    Gly C:1211 - Gly C:1212   [ RasMol ]  
    Gly D:1144 - Val D:1145   [ RasMol ]  
    Gly D:1211 - Gly D:1212   [ RasMol ]  
    His B:1013 - Pro B:1014   [ RasMol ]  
    His B:515 - Lys B:516   [ RasMol ]  
    Leu A:498 - Ala A:499   [ RasMol ]  
    Leu D:300 - Pro D:301   [ RasMol ]  
    Leu M:411 - Val M:412   [ RasMol ]  
    Leu M:450 - Glu M:451   [ RasMol ]  
    Leu M:455 - Ser M:456   [ RasMol ]  
    Leu N:395 - Arg N:396   [ RasMol ]  
    Leu N:411 - Val N:412   [ RasMol ]  
    Leu N:450 - Glu N:451   [ RasMol ]  
    Leu N:455 - Ser N:456   [ RasMol ]  
    Leu O:395 - Arg O:396   [ RasMol ]  
    Leu O:411 - Val O:412   [ RasMol ]  
    Leu O:450 - Glu O:451   [ RasMol ]  
    Leu O:455 - Ser O:456   [ RasMol ]  
    Leu P:450 - Glu P:451   [ RasMol ]  
    Leu P:455 - Ser P:456   [ RasMol ]  
    Lys B:1057 - Pro B:1058   [ RasMol ]  
    Lys B:1143 - Gly B:1144   [ RasMol ]  
    Lys M:392 - Pro M:393   [ RasMol ]  
    Lys N:409 - Thr N:410   [ RasMol ]  
    Lys O:392 - Pro O:393   [ RasMol ]  
    Phe A:495 - Gly A:496   [ RasMol ]  
    Pro A:301 - Glu A:302   [ RasMol ]  
    Pro C:301 - Glu C:302   [ RasMol ]  
    Pro M:524 - Glu M:525   [ RasMol ]  
    Pro M:529 - Val M:530   [ RasMol ]  
    Pro N:524 - Glu N:525   [ RasMol ]  
    Pro N:529 - Val N:530   [ RasMol ]  
    Pro O:529 - Val O:530   [ RasMol ]  
    Pro P:524 - Glu P:525   [ RasMol ]  
    Pro P:529 - Val P:530   [ RasMol ]  
    Ser P:456 - Gly P:457   [ RasMol ]  
    Tyr A:1086 - Glu A:1087   [ RasMol ]  
    Tyr B:1086 - Glu B:1087   [ RasMol ]  
    Tyr C:1086 - Glu C:1087   [ RasMol ]  
    Tyr D:1086 - Glu D:1087   [ RasMol ]  
    Val A:1080 - Val A:1081   [ RasMol ]  
    Val B:1080 - Val B:1081   [ RasMol ]  
    Val B:357 - Glu B:358   [ RasMol ]  
    Val C:541 - Val C:542   [ RasMol ]  
    Val D:1080 - Val D:1081   [ RasMol ]  
    Val N:518 - Arg N:519   [ RasMol ]  
    Val O:518 - Arg O:519   [ RasMol ]  
    Val P:518 - Arg P:519   [ RasMol ]  
 

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  4iqj
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  DPO3A_THEAQ | Q9XDH5
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  2.7.7.7
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  DPO3A_THEAQ | Q9XDH5
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        DPO3A_THEAQ | Q9XDH5: 2hpi 2hpm 3e0d

(-) Related Entries Specified in the PDB File

2hpi THE STRUCTURE OF T. AQUATICUS DNA POLYMERASE III
3e0d THE STRUCTURE OF A TERNARY COMPLEX OF THE DNA POLYMERASE III ALPHA-SUBUNIT