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(-) Description

Title :  CRYSTAL STRUCTURE OF METHYIONYL-TRNA FORMYLTRANSFERASE FROM BACILLUS ANTHRACIS
 
Authors :  Y. Kim, M. Makowska-Grzyska, K. Kwon, W. F. Anderson, A. Joachimiak, Ce Structural Genomics Of Infectious Diseases (Csgid)
Date :  11 Jan 13  (Deposition) - 23 Jan 13  (Release) - 23 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.38
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Alpha-Beta Structure, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, M. Makowska-Grzyska, K. Kwon, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of Methyionyl-Trna Formyltransferase From Bacillus Anthracis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - METHIONYL-TRNA FORMYLTRANSFERASE
    Chains: A, B, C, D
    EC Number: 2.1.2.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: METHIONYL-TRNA FORMYLTRANSFERASE
    Gene: BAS3717, BA_4004, FMT, GBAA_4004
    Mutation: YES
    Organism Common: ANTHRAX,ANTHRAX BACTERIUM
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 1392
    Strain: STERNE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 33)

Asymmetric Unit (4, 33)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2MSE24Mod. Amino AcidSELENOMETHIONINE
3PG51Ligand/Ion1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE
4SO44Ligand/IonSULFATE ION
Biological Unit 1 (4, 9)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE6Mod. Amino AcidSELENOMETHIONINE
3PG51Ligand/Ion1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE
4SO41Ligand/IonSULFATE ION
Biological Unit 2 (3, 8)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE6Mod. Amino AcidSELENOMETHIONINE
3PG5-1Ligand/Ion1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE
4SO41Ligand/IonSULFATE ION
Biological Unit 3 (2, 7)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE6Mod. Amino AcidSELENOMETHIONINE
3PG5-1Ligand/Ion1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE
4SO4-1Ligand/IonSULFATE ION
Biological Unit 4 (3, 9)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE6Mod. Amino AcidSELENOMETHIONINE
3PG5-1Ligand/Ion1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE
4SO42Ligand/IonSULFATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:123 , MSE A:126 , GLU A:127BINDING SITE FOR RESIDUE PG5 A 401
2AC2SOFTWAREALA A:87 , HIS A:108 , ALA A:109 , PHE A:166 , HOH A:527 , HOH A:528 , HOH A:625BINDING SITE FOR RESIDUE GOL A 402
3AC3SOFTWAREARG A:159 , HOH A:549BINDING SITE FOR RESIDUE SO4 A 403
4AC4SOFTWAREALA B:87 , VAL B:107 , HIS B:108 , ALA B:109 , PRO B:120 , HOH B:508 , HOH B:523 , HOH B:524 , HOH B:551BINDING SITE FOR RESIDUE GOL B 401
5AC5SOFTWARETYR B:123 , MSE B:126 , GLU B:127 , HOH B:548 , HOH B:622BINDING SITE FOR RESIDUE SO4 B 402
6AC6SOFTWAREPHE C:12 , ALA C:87 , HIS C:108 , ALA C:109 , PRO C:120 , PHE C:166BINDING SITE FOR RESIDUE GOL C 401
7AC7SOFTWAREPHE D:12 , ALA D:87 , HIS D:108 , ALA D:109 , PRO D:120 , PHE D:166BINDING SITE FOR RESIDUE GOL D 401
8AC8SOFTWARELYS D:129 , GLU D:130 , LYS D:131BINDING SITE FOR RESIDUE SO4 D 402
9AC9SOFTWARESER D:294 , SER D:296 , GLN D:297 , ARG D:300BINDING SITE FOR RESIDUE SO4 D 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IQF)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Leu A:112 -Pro A:113
2Asn A:229 -Pro A:230
3Trp A:231 -Pro A:232
4Leu B:112 -Pro B:113
5Asn B:229 -Pro B:230
6Trp B:231 -Pro B:232
7Leu C:112 -Pro C:113
8Asn C:229 -Pro C:230
9Trp C:231 -Pro C:232
10Leu D:112 -Pro D:113
11Asn D:229 -Pro D:230
12Trp D:231 -Pro D:232

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IQF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IQF)

(-) Exons   (0, 0)

(no "Exon" information available for 4IQF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4iqfa1 A:-2-204 automated matches                                                                                                                                                                             d4iqfa2 A:205-311 automated matches                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee...hhhhhhhhhhhh..eeeeee.....ee....ee..hhhhhhhhhh...ee......hhhhhhhhhhhh..eeeee......hhhhhh.....eeeee..........hhhhhhhhh...eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhh......hhhhhh.....hhhhhhhhhhh......eeeee..eeeeeeeeeeee.........eeee....eee.....eeeeeeeeee.....eehhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iqf A  -2 SNAmIKVVFmGTPDFSVPVLRRLIEDGYDVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHGIPVLQPLRIREKDEYEKVLALEPDLIVTAAFGQIVPNEILEAPKYGCINVHASLLPELRGGAPIHYAImEGKEKTGITImYmVEKLDAGDILTQVEVEIEERETTGSLFDKLSEAGAHLLSKTVPLLIQGKLEPIKQNEEEVTFAYNIKREQEKIDWTKTGEEVYNHIRGLNPWPVAYTTLAGQVVKVWWGEKVPVTKSAEAGTIVAIEEDGFVVATGNETGVKITELQPSGKKRmSCSQFLRGTKPEIGTKLG 311
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137 |     147       157       167       177       187       197       207       217       227       237       247       257       267       277       287     | 297       307    
                               |     7-MSE                                                                                                                126-MSE    137-MSE                                                                                                                                                     293-MSE              
                               1-MSE                                                                                                                                   139-MSE                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4iqfb1 B:-1-204 automated matches                                                                                                                                                                            d4iqfb2 B:205-312 automated matches                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee...hhhhhhhhhhhh..eeeeee.....ee....ee..hhhhhhhh.....ee......hhhhhhhhhhh...eeeee......hhhhhh.....eeeee..........hhhhhhhhh...eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhh.....hhhhhhhhhhhh......eeee..eeeeeeeeeeee.........eeee....eee.....eeeeeeeeee.....eehhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iqf B  -1 NAmIKVVFmGTPDFSVPVLRRLIEDGYDVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHGIPVLQPLRIREKDEYEKVLALEPDLIVTAAFGQIVPNEILEAPKYGCINVHASLLPELRGGAPIHYAImEGKEKTGITImYmVEKLDAGDILTQVEVEIEERETTGSLFDKLSEAGAHLLSKTVPLLIQGKLEPIKQNEEEVTFAYNIKREQEKIDWTKTGEEVYNHIRGLNPWPVAYTTLAGQVVKVWWGEKVPVTKSAEAGTIVAIEEDGFVVATGNETGVKITELQPSGKKRmSCSQFLRGTKPEIGTKLGE 312
                              |     |8        18        28        38        48        58        68        78        88        98       108       118       128       138|      148       158       168       178       188       198       208       218       228       238       248       258       268       278       288    |  298       308    
                              1-MSE 7-MSE                                                                                                                126-MSE    137-MSE                                                                                                                                                     293-MSE               
                                                                                                                                                                      139-MSE                                                                                                                                                                         


Chain C from PDB  Type:PROTEIN  Length:315
                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains d4iqfc1 C:-2-204 automated matches                                                                                                                                                                             d4iqfc2 C:205-312 automated matches                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee.hhhhhhhhhhhhhh..eeeeee...............hhhhhhhhh....ee......hhhhhhhhhh....eeeee......hhhhhhh...eeeeee..........hhhhhhhhh...eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhh......hhhhh......hhhhhhhhhhhh.....eeeee..eeeeeeeeeeee.........eeee....eeee....eeeeeeeeee.....eehhhhh............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iqf C  -2 SNAmIKVVFmGTPDFSVPVLRRLIEDGYDVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHGIPVLQPLRIREKDEYEKVLALEPDLIVTAAFGQIVPNEILEAPKYGCINVHASLLPELRGGAPIHYAImEGKEKTGITImYmVEKLDAGDILTQVEVEIEERETTGSLFDKLSEAGAHLLSKTVPLLIQGKLEPIKQNEEEVTFAYNIKREQEKIDWTKTGEEVYNHIRGLNPWPVAYTTLAGQVVKVWWGEKVPVTKSAEAGTIVAIEEDGFVVATGNETGVKITELQPSGKKRmSCSQFLRGTKPEIGTKLGE 312
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137 |     147       157       167       177       187       197       207       217       227       237       247       257       267       277       287     | 297       307     
                               1-MSE 7-MSE                                                                                                                126-MSE    137-MSE                                                                                                                                                     293-MSE               
                                                                                                                                                                       139-MSE                                                                                                                                                                         


Chain D from PDB  Type:PROTEIN  Length:315
                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains d4iqfd1 D:-2-204 automated matches                                                                                                                                                                             d4iqfd2 D:205-312 automated matches                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee....hhhhhhhhhhhh.eeeeee....eee....eee.hhhhhhhhhhh..ee......hhhhhhhhhh....eeeee......hhhhhh....eeeeee..........hhhhhhhhh...eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhh......hhhhh......hhhhhhhhhhhh.....eeeee..eeeeeeeeeeee.........eeee....eee.....eeeeeeeeee.....eehhhhh............. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iqf D  -2 SNAmIKVVFmGTPDFSVPVLRRLIEDGYDVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHGIPVLQPLRIREKDEYEKVLALEPDLIVTAAFGQIVPNEILEAPKYGCINVHASLLPELRGGAPIHYAImEGKEKTGITImYmVEKLDAGDILTQVEVEIEERETTGSLFDKLSEAGAHLLSKTVPLLIQGKLEPIKQNEEEVTFAYNIKREQEKIDWTKTGEEVYNHIRGLNPWPVAYTTLAGQVVKVWWGEKVPVTKSAEAGTIVAIEEDGFVVATGNETGVKITELQPSGKKRmSCSQFLRGTKPEIGTKLGE 312
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137 |     147       157       167       177       187       197       207       217       227       237       247       257       267       277       287     | 297       307     
                               1-MSE 7-MSE                                                                                                                126-MSE    137-MSE                                                                                                                                                     293-MSE               
                                                                                                                                                                       139-MSE
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IQF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IQF)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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