4IOO - JenaLib

Title :   CRYSTAL STRUCTURE OF THE FIRST BROMODOMAIN OF BRD4 IN COMPLEX WITH N-METHYLTRIMETHYLACETAMIDE

Authors :   G. Lolli, R. Battistutta

Date :   08 Jan 13 (Deposition) - 02 Oct 13 (Release) - 13 Nov 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.25

Chains :   Asym./Biol. Unit : A

Keywords :   Bromodomain, Low Mw Fragment, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Lolli, R. Battistutta
Different Orientations Of Low-Molecular-Weight Fragments In The Binding Pocket Of A Brd4 Bromodomain.
Acta Crystallogr. , Sect. D V. 69 2161 2013
PubMed-ID: 24100334 | Reference-DOI: 10.1107/S090744491301994X

Compounds

Molecule 1 - BROMODOMAIN-CONTAINING PROTEIN 4
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Fragment	:	FIRST BROMODOMAIN (UNP RESIDUES 44-168)
	Gene	:	BRD4, HUNK1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	PROTEIN HUNK1

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 7)

Sites (7, 7)

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ILE A:100 , ILE A:101 , LYS A:102 , THR A:103 , ASN A:135	BINDING SITE FOR RESIDUE EDO A 301
2	AC2	SOFTWARE	THR A:134 , ILE A:138 , LYS A:160	BINDING SITE FOR RESIDUE EDO A 302
3	AC3	SOFTWARE	ARG A:58 , GLN A:59 , LEU A:63 , LEU A:114 , ASN A:117 , HOH A:422 , HOH A:490	BINDING SITE FOR RESIDUE EDO A 303
4	AC4	SOFTWARE	HIS A:77 , ASN A:130 , THR A:134 , LEU A:156 , HOH A:426 , HOH A:438 , HOH A:458	BINDING SITE FOR RESIDUE EDO A 304
5	AC5	SOFTWARE	TRP A:81 , PRO A:82 , LYS A:99 , ILE A:146 , MET A:149 , HOH A:420 , HOH A:497 , HOH A:511	BINDING SITE FOR RESIDUE EDO A 305
6	AC6	SOFTWARE	PHE A:83 , LEU A:92 , LEU A:94 , TYR A:139 , ASN A:140 , ILE A:146 , HOH A:419 , HOH A:519	BINDING SITE FOR RESIDUE BAE A 306
7	AC7	SOFTWARE	ASN A:140 , ILE A:146 , HOH A:419	BINDING SITE FOR RESIDUE DMS A 307

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains d4iooa_ A: automated matches                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..................hhhhhhhhhhhhhhhhh...hhhhh...........hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ioo A  42 SMNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTE 167
                                    51        61        71        81        91       101       111       121       131       141       151       161

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (22, 22)

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	4ioo
		Family and Domain Information	:	ProDom \| SYSTERS
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