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(-) Description

Title :  CRYSTAL STRUCTURE OF RIBOSE-5-ISOMERASE A FROM FRANCISELLA TULARENSIS
 
Authors :  R. Rostankowski, C. Nakka, S. Grimshaw, D. Borek, Z. Otwinowski, Cente Structural Genomics Of Infectious Diseases (Csgid)
Date :  07 Jan 13  (Deposition) - 13 Feb 13  (Release) - 13 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Rostankowski, M. Orlikowska, C. Nakka, S. Grimshaw, D. Borek, Z. Otwinowski, Center For Structural Genomics Of Infectious Diseases (Csgid)
Structural And Biophysical Studies Of Ribose-5-Phosphate Isomerase A From Francisella Tularensis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RIBOSE-5-PHOSPHATE ISOMERASE A
    Chains: A, B
    EC Number: 5.3.1.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ROSETTA(DE3)PLYSS
    Expression System Taxid: 469008
    Gene: FTT_1208, FTW_1255, RPIA
    Organism Scientific: FRANCISELLA TULARENSIS SUBSP. TULARENSIS
    Organism Taxid: 177416
    Strain: SCHU S4 / SCHU 4
    Synonym: PHOSPHORIBOISOMERASE A, PRI

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric/Biological Unit (4, 12)
No.NameCountTypeFull Name
1BR2Ligand/IonBROMIDE ION
2CL6Ligand/IonCHLORIDE ION
3PG41Ligand/IonTETRAETHYLENE GLYCOL
4PO43Ligand/IonPHOSPHATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:101 , GLY A:103 , ALA A:104 , ALA A:105 , GLU A:109BINDING SITE FOR RESIDUE CL A 301
02AC2SOFTWAREASN A:184 , PRO A:185 , LEU A:186BINDING SITE FOR RESIDUE CL A 302
03AC3SOFTWAREARG A:146 , HOH A:538BINDING SITE FOR RESIDUE CL A 303
04AC4SOFTWAREASN A:130 , THR A:131 , ASN A:134BINDING SITE FOR RESIDUE BR A 305
05AC5SOFTWARESER A:36 , THR A:37 , LYS A:127 , HOH A:532 , HOH A:544BINDING SITE FOR RESIDUE PO4 A 306
06AC6SOFTWAREGLU A:125 , SER A:126 , LYS A:128 , HOH A:469 , HOH A:477BINDING SITE FOR RESIDUE PG4 A 307
07AC7SOFTWAREMET A:144 , LEU B:76BINDING SITE FOR RESIDUE CL B 301
08AC8SOFTWAREARG B:146BINDING SITE FOR RESIDUE CL B 302
09AC9SOFTWARELEU B:180 , LYS B:181BINDING SITE FOR RESIDUE BR B 303
10BC1SOFTWAREHIS B:95 , ASP B:169 , GLY B:171 , LEU B:186BINDING SITE FOR RESIDUE PO4 B 304
11BC2SOFTWAREGLY B:35 , SER B:36 , THR B:37 , LYS B:127BINDING SITE FOR RESIDUE PO4 B 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IO1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IO1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IO1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IO1)

(-) Exons   (0, 0)

(no "Exon" information available for 4IO1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.....eeeee..hhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhh.....hhhhhh...eeee...ee.....ee.....hhhhhhhhhhh...eeeeee.hhh........eeeee...hhhhhhhhhhhhh.eeee..........eeeeee.....hhhhhhhhhhh...eeee.ee......eeeeee...eeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4io1 A   7 NNQDELKKLAATEAAKSITTEITLGVGTGSTVGFLIEELVNYRDKIKTVVSSSEDSTRKLKALGFDVVDLNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNTLGNFPLPIEVIPMARSYIARQIVKLGGQPVYREQTITDNGNVILDVYNLKIDNPLKLETELNQITGVVTNGIFALKPADTVIMATKDSNIVVL 224
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216        


Chain B from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh.....eeeee..hhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhh.....hhhhhh.eeeeee...ee.....ee.....hhhhhhhhhhheeeeeeeee.hhh........eeeee...hhhhhhhhhhhh..eeee..........eeeeee.....hhhhhhhhhhh...eeee.ee......eeeee.....eeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4io1 B  10 DELKKLAATEAAKSITTEITLGVGTGSTVGFLIEELVNYRDKIKTVVSSSEDSTRKLKALGFDVVDLNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNTLGNFPLPIEVIPMARSYIARQIVKLGGQPVYREQTITDNGNVILDVYNLKIDNPLKLETELNQITGVVTNGIFALKPADTVIMATKDSNIVVL 224
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IO1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IO1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IO1)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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