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(-) Description

Title :  STRUCTURE OF THE DIOXYGENASE DOMAIN OF SACTE_2871, A NOVEL DIOXYGENASE CARBOHYDRATE-BINDING PROTEIN FUSION FROM THE CELLULOLYTIC BACTERIUM STREPTOMYCES SP. SIREXAA-E
 
Authors :  C. M. Bianchetti, T. E. Takasuka, L. F. Bergeman, C. H. Harmann, B. G. Fox
Date :  01 Jan 13  (Deposition) - 15 May 13  (Release) - 10 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.06
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Iron Center, Intradiol Dioxygenase, Carbohydrate Binding Domain, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. M. Bianchetti, C. H. Harmann, T. E. Takasuka, G. L. Hura, K. Dyer, B. G. Fox
Fusion Of Dioxygenase And Lignin-Binding Domains In A Novel Secreted Enzyme From Cellulolytic Streptomyces Sp. Sirexaa-E.
J. Biol. Chem. V. 288 18574 2013
PubMed-ID: 23653358  |  Reference-DOI: 10.1074/JBC.M113.475848

(-) Compounds

Molecule 1 - INTRADIOL RING-CLEAVAGE DIOXYGENASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PVP68K
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SACTE_2871
    Organism Scientific: STREPTOMYCES SP. SIREXAA-E
    Organism Taxid: 862751

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2FE2Ligand/IonFE (III) ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2FE-1Ligand/IonFE (III) ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2FE-1Ligand/IonFE (III) ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:138 , TYR A:167 , HIS A:173 , HIS A:175 , EDO A:302BINDING SITE FOR RESIDUE FE A 301
2AC2SOFTWAREPRO A:86 , TYR A:87 , TYR A:138 , TYR A:167 , ARG A:170 , HIS A:173 , HIS A:175 , FE A:301 , HOH A:444BINDING SITE FOR RESIDUE EDO A 302
3AC3SOFTWAREPRO A:94 , ARG A:213 , HOH A:438 , TYR B:87 , ALA B:137 , TYR B:138BINDING SITE FOR RESIDUE EDO A 303
4AC4SOFTWARETYR B:138 , TYR B:167 , HIS B:173 , HIS B:175 , EDO B:302BINDING SITE FOR RESIDUE FE B 301
5AC5SOFTWAREPRO B:86 , TYR B:87 , TYR B:138 , TYR B:167 , ARG B:170 , HIS B:173 , HIS B:175 , FE B:301BINDING SITE FOR RESIDUE EDO B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ILV)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asp A:77 -Pro A:78

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ILV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ILV)

(-) Exons   (0, 0)

(no "Exon" information available for 4ILV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:155
                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............................eeeeeeeee..........eeeee...............eeeee.....eeeeeee..........eeeeeee......eeeeee...hhhhh.....hhhhh.eeeee..eeeee..ee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ilv A  77 DPTPDQMEGPYFKPDSPPRTSLVTSSTPGVPLTVSGYVFGRACKPLTGVLLDFWQADTGGAYDMTGFAFRGHQFTGADGSFTLRTIVPGLYPGRTRHIHVKAQAPGRPVLTTQLYFPGEPRNTTDALFDPALLMNVRSAGPGREGTFDFVLDVAQ 231
                                    86        96       106       116       126       136       146       156       166       176       186       196       206       216       226     


Chain B from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................................eeeeeeeee..........eeeee...............eeeee.....eeeeeee..........eeeeeee......eeeeee...hhhhh.....hhhhh.eeeee..eeeee..ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ilv B  74 DGDDPTPDQMEGPYFKPDSPPRTSLVTSSTPGVPLTVSGYVFGRACKPLTGVLLDFWQADTGGAYDMTGFAFRGHQFTGADGSFTLRTIVPGLYPGRTRHIHVKAQAPGRPVLTTQLYFPGEPRNTTDALFDPALLMNVRSAGPGREGTFDFVLDVA 230
                                    83        93       103       113       123       133       143       153       163       173       183       193       203       213       223
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ILV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ILV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ILV)

(-) Gene Ontology  (12, 12)

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 Related Entries

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        G2NEL6_STREK | G2NEL6: 4ilt

(-) Related Entries Specified in the PDB File

4ilt 4ily 4im1 4im4