Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF BETA-GLUCOSIDASE 1 FROM ASPERGILLUS ACULEATUS IN COMPLEX WITH CASTANOSPERMINE
 
Authors :  K. Suzuki, J. Sumitani, T. Kawaguchi, S. Fushinobu
Date :  20 Dec 12  (Deposition) - 10 Apr 13  (Release) - 31 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Tim Barrel, Hydrolase, High-Mannose N-Glycosylations, Extracellular (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Suzuki, J. Sumitani, Y. W. Nam, T. Nishimaki, S. Tani, T. Wakagi, T. Kawaguchi, S. Fushinobu
Crystal Structures Of Glycoside Hydrolase Family 3 Beta-Glucosidase 1 From Aspergillus Aculeatus
Biochem. J. V. 452 211 2013
PubMed-ID: 23537284  |  Reference-DOI: 10.1042/BJ20130054
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BETA-GLUCOSIDASE 1
    Chains: A, B
    EC Number: 3.2.1.21
    Engineered: YES
    Expression System: ASPERGILLUS ORYZAE
    Expression System Plasmid: PNAN8142
    Expression System Strain: NIAD300
    Expression System Taxid: 5062
    Expression System Vector Type: PLASMID
    Gene: BGL1
    Organism Scientific: ASPERGILLUS ACULEATUS
    Organism Taxid: 5053
    Strain: F-50
    Synonym: BETA-D-GLUCOSIDE GLUCOHYDROLASE, CELLOBIASE, GENTIOBIASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 89)

Asymmetric/Biological Unit (6, 89)
No.NameCountTypeFull Name
1BMA12Ligand/IonBETA-D-MANNOSE
2CTS2Ligand/IonCASTANOSPERMINE
3MAN36Ligand/IonALPHA-D-MANNOSE
4MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
5MRD4Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
6NAG33Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (27, 27)

Asymmetric Unit (27, 27)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:211 , ASN A:619BINDING SITE FOR RESIDUE NAG A 905
02AC2SOFTWAREARG A:702 , ASN A:712 , ALA A:718 , SER A:719 , GLY A:721BINDING SITE FOR RESIDUE NAG A 937
03AC3SOFTWAREARG A:416 , HIS A:473 , LYS A:474 , GLY A:475 , HOH A:1156 , NAG B:943BINDING SITE FOR RESIDUE MRD A 938
04AC4SOFTWAREASP A:99 , SER A:357 , TRP A:358 , ARG A:360 , GLU A:455 , HOH A:1081BINDING SITE FOR RESIDUE MPD A 939
05AC5SOFTWAREARG A:98 , PHE A:305 , TYR A:511BINDING SITE FOR RESIDUE MPD A 940
06AC6SOFTWAREASP A:92 , ARG A:98 , ARG A:156 , LYS A:189 , HIS A:190 , ARG A:200 , MET A:245 , TYR A:248 , ASP A:280 , TRP A:281 , SER A:451 , GLU A:509BINDING SITE FOR RESIDUE CTS A 941
07AC7SOFTWAREMAN A:915 , ASN B:211 , ASN B:619BINDING SITE FOR RESIDUE NAG B 908
08AC8SOFTWAREMRD A:938 , ASN B:658BINDING SITE FOR RESIDUE NAG B 943
09AC9SOFTWAREARG B:702 , ASN B:712 , ALA B:718 , SER B:719BINDING SITE FOR RESIDUE NAG B 944
10BC1SOFTWARETRP B:68 , ARG B:98 , PHE B:305 , GLU B:509 , TYR B:511 , CTS B:948BINDING SITE FOR RESIDUE MRD B 945
11BC2SOFTWAREASP B:99 , SER B:357 , TRP B:358 , THR B:359 , ARG B:360 , GLU B:455 , HOH B:1302BINDING SITE FOR RESIDUE MRD B 946
12BC3SOFTWAREASN B:219 , SER B:627 , NAG B:909BINDING SITE FOR RESIDUE MRD B 947
13BC4SOFTWAREVAL B:74 , ASP B:92 , ARG B:98 , ARG B:156 , LYS B:189 , HIS B:190 , ARG B:200 , MET B:245 , TYR B:248 , ASP B:280 , TRP B:281 , SER B:451 , GLU B:509 , MRD B:945BINDING SITE FOR RESIDUE CTS B 948
14BC5SOFTWAREASP A:57 , ASN A:61 , GLY A:78 , PRO A:81 , TYR A:367 , PHE A:706 , TYR A:708 , TRP A:710 , HOH A:1088BINDING SITE FOR LINKED RESIDUES A 901 to 904
15BC6SOFTWARESER A:25 , PRO A:26 , VAL A:220 , ASP A:221 , ASP A:222 , ILE A:251 , ASN A:252 , TYR A:261 , THR A:262 , VAL A:827 , ALA A:828 , HOH A:1059 , HOH A:1149 , HOH A:1199 , HOH A:1331BINDING SITE FOR LINKED RESIDUES A 906 to 908
16BC7SOFTWAREILE A:303 , THR A:309 , SER A:310 , PHE A:311 , ASN A:315 , SER A:720 , GLY A:721 , NAG A:912 , HOH A:1085 , HOH A:1094 , HOH A:1292BINDING SITE FOR LINKED RESIDUES A 909 to 910
17BC8SOFTWARESER A:25 , PRO A:27 , SER A:213 , ASP A:214 , SER A:254 , GLN A:258 , HIS A:285 , SER A:286 , GLY A:287 , VAL A:288 , GLY A:289 , PHE A:311 , ASN A:315 , ILE A:318 , ASN A:322 , THR A:324 , ASP A:722 , TYR A:724 , TYR A:725 , GLY A:726 , VAL A:727 , ASP A:728 , THR A:729 , HIS A:732 , NAG A:909 , HOH A:1063 , HOH A:1094 , HOH A:1112 , HOH A:1133 , HOH A:1178 , HOH A:1239 , HOH A:1254 , HOH A:1281 , HOH A:1316 , HOH A:1333 , NAG B:908BINDING SITE FOR LINKED RESIDUES A 911 to 920
18BC9SOFTWAREGLU A:423 , CYS A:440 , ASN A:442 , ASP A:515 , LYS A:528 , HOH A:1044BINDING SITE FOR LINKED RESIDUES A 921 to 923
19CC1SOFTWAREASP A:482 , TRP A:484 , ALA A:485 , GLN A:488 , ASP A:515 , ASN A:517 , ASN A:523 , TRP A:527 , LYS A:528 , HOH A:1042 , HOH A:1150 , HOH A:1232 , HOH A:1313 , HOH A:1340 , TYR B:430 , NAG B:926BINDING SITE FOR LINKED RESIDUES A 924 to 930
20CC2SOFTWAREALA A:538 , ASN A:539 , ASN A:540 , ASN A:542 , HIS A:562 , ASN A:564 , HOH A:1003 , HOH A:1102 , HOH A:1251 , HOH A:1280 , THR B:359 , ASP B:361 , PHE B:368 , TYR B:375 , HOH B:1204 , HOH B:1412 , HOH B:1430BINDING SITE FOR LINKED RESIDUES A 931 to 936
21CC3SOFTWAREASP B:57 , GLU B:58 , ASN B:61 , GLY B:78 , PRO B:81 , TYR B:367 , PRO B:374 , LYS B:404 , ASP B:561 , GLY B:699 , ILE B:703 , PHE B:706 , TYR B:708 , TRP B:710 , HOH B:1059 , HOH B:1129 , HOH B:1221 , HOH B:1330 , HOH B:1375BINDING SITE FOR LINKED RESIDUES B 901 to 907
22CC4SOFTWARESER B:25 , PRO B:26 , VAL B:220 , ASP B:221 , ASP B:222 , ILE B:251 , ASN B:252 , TYR B:261 , VAL B:827 , ALA B:828 , MRD B:947 , HOH B:1043 , HOH B:1147 , HOH B:1276 , HOH B:1287BINDING SITE FOR LINKED RESIDUES B 909 to 912
23CC5SOFTWAREILE B:303 , THR B:309 , SER B:310 , PHE B:311 , ASN B:315 , SER B:720 , NAG B:916 , HOH B:1042 , HOH B:1064 , HOH B:1079 , HOH B:1227 , HOH B:1248 , HOH B:1350BINDING SITE FOR LINKED RESIDUES B 913 to 914
24CC6SOFTWARESER B:25 , PRO B:27 , SER B:213 , ASP B:214 , GLN B:258 , HIS B:285 , GLY B:287 , VAL B:288 , GLY B:289 , PHE B:311 , ASN B:315 , ILE B:318 , ASN B:322 , THR B:324 , ASP B:722 , TYR B:724 , TYR B:725 , GLY B:726 , VAL B:727 , ASP B:728 , THR B:729 , HIS B:732 , PRO B:734 , NAG B:913 , HOH B:1042 , HOH B:1103 , HOH B:1114 , HOH B:1123 , HOH B:1135 , HOH B:1148 , HOH B:1151 , HOH B:1242 , HOH B:1249 , HOH B:1263 , HOH B:1308 , HOH B:1335BINDING SITE FOR LINKED RESIDUES B 915 to 924
25CC7SOFTWAREMAN A:929 , GLU B:423 , CYS B:440 , ASN B:442 , ASP B:515 , LYS B:528 , HOH B:1232BINDING SITE FOR LINKED RESIDUES B 925 to 927
26CC8SOFTWARETYR A:430 , ASP B:482 , TRP B:484 , ALA B:485 , GLN B:488 , ASP B:515 , ASN B:517 , ASN B:523 , TRP B:527 , LYS B:528 , HOH B:1208BINDING SITE FOR LINKED RESIDUES B 928 to 934
27CC9SOFTWARETHR A:359 , ASP A:361 , PHE A:368 , GLN A:371 , TYR A:375 , HOH A:1229 , ASN B:539 , ASN B:540 , ASN B:542 , HIS B:562 , ASN B:564 , HOH B:1365 , HOH B:1384 , HOH B:1389 , HOH B:1392 , HOH B:1393 , HOH B:1426 , HOH B:1447 , HOH B:1449BINDING SITE FOR LINKED RESIDUES B 935 to 942

(-) SS Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1A:73 -A:89
2A:246 -A:257
3A:435 -A:440
4B:73 -B:89
5B:246 -B:257
6B:435 -B:440

(-) Cis Peptide Bonds  (16, 16)

Asymmetric/Biological Unit
No.Residues
1Tyr A:29 -Pro A:30
2Asp A:92 -Ser A:93
3Gly A:142 -Pro A:143
4Gly A:146 -Pro A:147
5Lys A:189 -His A:190
6Tyr A:191 -Ile A:192
7Met A:299 -Pro A:300
8Leu A:409 -Pro A:410
9Tyr B:29 -Pro B:30
10Asp B:92 -Ser B:93
11Gly B:142 -Pro B:143
12Gly B:146 -Pro B:147
13Lys B:189 -His B:190
14Tyr B:191 -Ile B:192
15Met B:299 -Pro B:300
16Leu B:409 -Pro B:410

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IIF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IIF)

(-) Exons   (0, 0)

(no "Exon" information available for 4IIF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:833
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhhh..hhhhhhhhhh..........ee...hhhhh....eee................hhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee...............hhhhh...hhhhhhhhhhhhhhhhhhh..eeeeeee.........hhhhhhhh........eee.hhhhhhhh.hhhhhhhhhh...eeee...ee..ee...hhhhhh...........eeee.......hhhhhhh...................hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh............eeeee....eeeeee..........hhhhhhhhhhh..eeeee...........eeeee.hhhh........hhhhh.....................hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhh.eeeeeeee.......ee..ee..........hhhhhhhhhhh....eeeeeee..............eeeeee......hhhhhhhhhhh................hhhhh..............eee......hhhhhhhhh................eeeeeeeeee..................hhhhhh...................hhhhhhh......hhhhhh.....................hhhhh.eeeeeeeeeee.....eee..eeeee.........eeeee..eee....eeeeeeeeehhhhheee....eee......eeeee.......eeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iif A  22 LAFSPPFYPSPWANGQGEWAEAYQRAVAIVSQMTLDEKVNLTTGTGWELEKCVGQTGGVPRLNIGGMCLQDSPLGIRDSDYNSAFPAGVNVAATWDKNLAYLRGQAMGQEFSDKGIDVQLGPAAGPLGRSPDGGRNWEGFSPDPALTGVLFAETIKGIQDAGVVATAKHYILNEQEHFRQVAEAAGYGFNISDTISSNVDDKTIHEMYLWPFADAVRAGVGAIMCSYNQINNSYGCQNSYTLNKLLKAELGFQGFVMSDWGAHHSGVGSALAGLDMSMPGDITFDSATSFWGTNLTIAVLNGTVPQWRVDDMAVRIMAAYYKVGRDRLYQPPNFSSWTRDEYGFKYFYPQEGPYEKVNHFVNVQRNHSEVIRKLGADSTVLLKNNNALPLTGKERKVAILGEDAGSNSYGANGCSDRGCDNGTLAMAWGSGTAEFPYLVTPEQAIQAEVLKHKGSVYAITDNWALSQVETLAKQASVSLVFVNSDAGEGYISVDGNEGDRNNLTLWKNGDNLIKAAANNCNNTIVVIHSVGPVLVDEWYDHPNVTAILWAGLPGQESGNSLADVLYGRVNPGAKSPFTWGKTREAYGDYLVRELNNGNGAPQDDFSEGVFIDYRGFDKRNETPIYEFGHGLSYTTFNYSGLHIQVLNAVATETGAAPTFGQVGNASDYVYPEGLTRISKFIYPWLNSTDLKASSGDPYYGVDTAEHVPEGATDGSPQPVLPAGGGSGGNPRLYDELIRVSVTVKNTGRVAGDAVPQLYVSLGGPNEPKVVLRKFDRLTLKPSEETVWTTTLTRRDLSNWDVAAQDWVITSYPKKVHVGSSSRQLPLHAALPKV 859
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       676       686       696       706       716       726       736       746       756       766       776       786       796       806       816       826       836       846       856   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 669|                                                                                                                                                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  675                                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:832
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhhh..hhhhhhhhhh..........ee...hhhhh....eee................hhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee...............hhhhh...hhhhhhhhhhhhhhhhhhh..eeeeeee.........hhhhhhhh........eee.hhhhhhhh.hhhhhhhhhh...eeee...ee..ee...hhhhhh...........eeee.......hhhhhhhh..................hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh............eeeee....eeeeee..........hhhhhhhhhhhh.eeeee...........eeeee.hhhh........hhhhh.....................hhhhhhhhhhhhh..eeeee....hhhhhhhhhh...eeeeeeee.......ee..ee..........hhhhhhhhhhh....eeeeeee..............eeeeee......hhhhhhhhhhh................hhhhh..............eee.......hhhhhhhh................eeeeeeeeee................hhhhhh...................hhhhhhh.......hhhhh.....................hhhhh.eeeeeeeeeee.....eee..eeeee.........eeeee..eee....eeeeeeeee.hhhheee....eee......eeeee.......eeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iif B  22 LAFSPPFYPSPWANGQGEWAEAYQRAVAIVSQMTLDEKVNLTTGTGWELEKCVGQTGGVPRLNIGGMCLQDSPLGIRDSDYNSAFPAGVNVAATWDKNLAYLRGQAMGQEFSDKGIDVQLGPAAGPLGRSPDGGRNWEGFSPDPALTGVLFAETIKGIQDAGVVATAKHYILNEQEHFRQVAEAAGYGFNISDTISSNVDDKTIHEMYLWPFADAVRAGVGAIMCSYNQINNSYGCQNSYTLNKLLKAELGFQGFVMSDWGAHHSGVGSALAGLDMSMPGDITFDSATSFWGTNLTIAVLNGTVPQWRVDDMAVRIMAAYYKVGRDRLYQPPNFSSWTRDEYGFKYFYPQEGPYEKVNHFVNVQRNHSEVIRKLGADSTVLLKNNNALPLTGKERKVAILGEDAGSNSYGANGCSDRGCDNGTLAMAWGSGTAEFPYLVTPEQAIQAEVLKHKGSVYAITDNWALSQVETLAKQASVSLVFVNSDAGEGYISVDGNEGDRNNLTLWKNGDNLIKAAANNCNNTIVVIHSVGPVLVDEWYDHPNVTAILWAGLPGQESGNSLADVLYGRVNPGAKSPFTWGKTREAYGDYLVRELNNGNGAPQDDFSEGVFIDYRGFDKRNETPIYEFGHGLSYTTFNYSGLHIQVLNATETGAAPTFGQVGNASDYVYPEGLTRISKFIYPWLNSTDLKASSGDPYYGVDTAEHVPEGATDGSPQPVLPAGGGSGGNPRLYDELIRVSVTVKNTGRVAGDAVPQLYVSLGGPNEPKVVLRKFDRLTLKPSEETVWTTTLTRRDLSNWDVAAQDWVITSYPKKVHVGSSSRQLPLHAALPKVQ 860
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661      |678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848       858  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                668|                                                                                                                                                                                        
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 676
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IIF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IIF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IIF)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    BMA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CTS  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MAN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MPD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MRD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Asp A:92 - Ser A:93   [ RasMol ]  
    Asp B:92 - Ser B:93   [ RasMol ]  
    Gly A:142 - Pro A:143   [ RasMol ]  
    Gly A:146 - Pro A:147   [ RasMol ]  
    Gly B:142 - Pro B:143   [ RasMol ]  
    Gly B:146 - Pro B:147   [ RasMol ]  
    Leu A:409 - Pro A:410   [ RasMol ]  
    Leu B:409 - Pro B:410   [ RasMol ]  
    Lys A:189 - His A:190   [ RasMol ]  
    Lys B:189 - His B:190   [ RasMol ]  
    Met A:299 - Pro A:300   [ RasMol ]  
    Met B:299 - Pro B:300   [ RasMol ]  
    Tyr A:191 - Ile A:192   [ RasMol ]  
    Tyr A:29 - Pro A:30   [ RasMol ]  
    Tyr B:191 - Ile B:192   [ RasMol ]  
    Tyr B:29 - Pro B:30   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4iif
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  BGL1_ASPAC | P48825
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  3.2.1.21
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  BGL1_ASPAC | P48825
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BGL1_ASPAC | P48825: 4iib 4iic 4iid 4iie 4iig 4iih

(-) Related Entries Specified in the PDB File

4iib 4iic 4iid 4iie 4iig 4iih