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(-) Description

Title :  CRYSTAL STRUCTURE OF RICE DWARF14 (D14) IN COMPLEX WITH A GR24 HYDROLYSIS INTERMEDIATE
 
Authors :  X. E. Zhou, L. -H. Zhao, Z. -S. Wu, W. Yi, S. Li, Y. Li, Y. Xu, T. -H. Xu, Y. Liu Z. Chen, A. Kovach, Y. Kang, L. Hou, Y. He, C. Zhang, K. Melcher, H. E. Xu
Date :  18 Dec 12  (Deposition) - 23 Jan 13  (Release) - 23 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Strigolactone, Gr24 Hydrolysis, Alpha/Beta Hydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. H. Zhao, X. E. Zhou, Z. S. Wu, W. Yi, Y. Xu, S. Li, T. H. Xu, Y. Liu, R. Z. Chen, A. Kovach, Y. Kang, L. Hou, Y. He, C. Xie, W. Song, D. Zhong, Y. Xu, Y. Wang, J. Li, C. Zhang, K. Melcher, H. E. Xu
Crystal Structures Of Two Phytohormone Signal-Transducing Alpha / Beta Hydrolases: Karrikin-Signaling Kai2 And Strigolactone-Signaling Dwarf14.
Cell Res. V. 23 436 2013
PubMed-ID: 23381136  |  Reference-DOI: 10.1038/CR.2013.19

(-) Compounds

Molecule 1 - DWARF 88 ESTERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETDUET1
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 51-318
    Gene: D14, D88, LOC_OS03G10620, OS03G0203200
    Organism Common: JAPANESE RICE
    Organism Scientific: ORYZA SATIVA JAPONICA GROUP
    Organism Taxid: 39947
    Synonym: HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN, EXPRESSED, OS03G0203200 PROTEIN, CDNA CLONE J023064N24, FULL INSERT SEQUENCE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1OPL2Ligand/Ion(2R,3R)-2,4,4-TRIHYDROXY-3-METHYLBUTANAL
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1OPL1Ligand/Ion(2R,3R)-2,4,4-TRIHYDROXY-3-METHYLBUTANAL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1OPL1Ligand/Ion(2R,3R)-2,4,4-TRIHYDROXY-3-METHYLBUTANAL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:28 , SER A:97 , VAL A:98 , VAL A:194 , HIS A:247 , HOH A:1116BINDING SITE FOR RESIDUE OPL A 900
2AC2SOFTWAREPHE B:28 , SER B:97 , VAL B:98 , TYR B:159 , VAL B:194 , HIS B:247 , HOH B:1099 , HOH B:1100BINDING SITE FOR RESIDUE OPL B 900

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IHA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IHA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IHA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IHA)

(-) Exons   (0, 0)

(no "Exon" information available for 4IHA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:268
                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh..eeee....eeeee.....hhhhhh.hhhhh....eeee.........hhhhh......hhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhh...eeeeeee................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhh...eeeee.......hhhhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iha A   1 PSGAKLLQILNVRVVGSGERVVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFDFRRYDNLDAYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASPRFLNDSDYHGGFELEEIQQVFDAMGANYSAWATGYAPLAVGADVPAAVQEFSRTLFNMRPDISLHVCQTVFKTDLRGVLGMVRAPCVVVQTTRDVSVPASVAAYLKAHLGGRTTVEFLQTEGHLPHLSAPSLLAQVLRRALARY 268
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260        


Chain B from PDB  Type:PROTEIN  Length:268
                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh..eeee....eeeee.....hhhhhh.hhhhh....eeee.........hhhhh..hhhhhhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhh...eeeeeee................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh...eeeee........hhhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iha B   1 PSGAKLLQILNVRVVGSGERVVVLSHGFGTDQSAWSRVLPYLTRDHRVVLYDLVCAGSVNPDHFDFRRYDNLDAYVDDLLAILDALRIPRCAFVGHSVSAMIGILASIRRPDLFAKLVLIGASPRFLNDSDYHGGFELEEIQQVFDAMGANYSAWATGYAPLAVGADVPAAVQEFSRTLFNMRPDISLHVCQTVFKTDLRGVLGMVRAPCVVVQTTRDVSVPASVAAYLKAHLGGRTTVEFLQTEGHLPHLSAPSLLAQVLRRALARY 268
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IHA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IHA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IHA)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        D14_ORYSJ | Q10QA5: 3vxk 3w04 3w05 3wio 4ih9 5dj5

(-) Related Entries Specified in the PDB File

4ih1 4ih4 4ih9