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(-) Description

Title :  COMPLEX OF PORPHYROMONAS GINGIVALIS RGPB PRO- AND MATURE DOMAINS
 
Authors :  I. De Diego, F. T. Veillard, T. Guevara, B. Potempa, M. Sztukowska, J. P F. X. Gomis-Ruth
Date :  13 Dec 12  (Deposition) - 10 Apr 13  (Release) - 29 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Alpha/Beta/Alpha Sandwich, Cysteine Endopeptidase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. De Diego, F. T. Veillard, T. Guevara, B. Potempa, M. Sztukowska, J. Potempa, F. X. Gomis-Ruth
Porphyromonas Gingivalis Virulence Factor Gingipain Rgpb Shows A Unique Zymogenic Mechanism For Cysteine Peptidases.
J. Biol. Chem. V. 288 14287 2013
PubMed-ID: 23558682  |  Reference-DOI: 10.1074/JBC.M112.444927

(-) Compounds

Molecule 1 - GINGIPAIN R2 PRO-DOMAIN
    Chains: A, C, E, G
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PG_0506, PRTRII, RGP2, RGPB
    Organism Scientific: PORPHYROMONAS GINGIVALIS
    Organism Taxid: 242619
    Strain: W83
    Synonym: ARG-GINGIPAIN, GINGIPAIN 2, RGP-2
 
Molecule 2 - GINGIPAIN R2 MATURE DOMAIN
    Chains: B, D, F, H
    EC Number: 3.4.22.37
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 230-662
    Gene: PG_0506, PRTRII, RGP2, RGPB
    Organism Scientific: PORPHYROMONAS GINGIVALIS
    Organism Taxid: 242619
    Strain: W83
    Synonym: ARG-GINGIPAIN, GINGIPAIN 2, RGP-2

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 29)

Asymmetric Unit (8, 29)
No.NameCountTypeFull Name
1BA4Ligand/IonBARIUM ION
2CA14Ligand/IonCALCIUM ION
3CL1Ligand/IonCHLORIDE ION
4CSD4Mod. Amino Acid3-SULFINOALANINE
5GOL1Ligand/IonGLYCEROL
6MG1Ligand/IonMAGNESIUM ION
7NA3Ligand/IonSODIUM ION
8TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1BA-1Ligand/IonBARIUM ION
2CA-1Ligand/IonCALCIUM ION
3CL-1Ligand/IonCHLORIDE ION
4CSD1Mod. Amino Acid3-SULFINOALANINE
5GOL-1Ligand/IonGLYCEROL
6MG-1Ligand/IonMAGNESIUM ION
7NA-1Ligand/IonSODIUM ION
8TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1BA-1Ligand/IonBARIUM ION
2CA-1Ligand/IonCALCIUM ION
3CL-1Ligand/IonCHLORIDE ION
4CSD1Mod. Amino Acid3-SULFINOALANINE
5GOL-1Ligand/IonGLYCEROL
6MG-1Ligand/IonMAGNESIUM ION
7NA-1Ligand/IonSODIUM ION
8TRS-1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1BA-1Ligand/IonBARIUM ION
2CA-1Ligand/IonCALCIUM ION
3CL-1Ligand/IonCHLORIDE ION
4CSD1Mod. Amino Acid3-SULFINOALANINE
5GOL-1Ligand/IonGLYCEROL
6MG-1Ligand/IonMAGNESIUM ION
7NA-1Ligand/IonSODIUM ION
8TRS-1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 4 (2, 2)
No.NameCountTypeFull Name
1BA-1Ligand/IonBARIUM ION
2CA-1Ligand/IonCALCIUM ION
3CL-1Ligand/IonCHLORIDE ION
4CSD1Mod. Amino Acid3-SULFINOALANINE
5GOL1Ligand/IonGLYCEROL
6MG-1Ligand/IonMAGNESIUM ION
7NA-1Ligand/IonSODIUM ION
8TRS-1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (25, 25)

Asymmetric Unit (25, 25)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:99 , GLN A:200BINDING SITE FOR RESIDUE CL A 301
02AC2SOFTWAREGLU B:390 , HIS B:395 , ASP B:521 , HOH B:916 , HOH B:917BINDING SITE FOR RESIDUE BA B 701
03AC3SOFTWAREILE A:159 , VAL B:329 , ASP B:332 , TYR B:334 , GLU B:336 , HOH B:831BINDING SITE FOR RESIDUE CA B 702
04AC4SOFTWAREASP B:307 , PHE B:478 , GLU B:487 , HOH B:845 , HOH B:846 , HOH B:847BINDING SITE FOR RESIDUE CA B 703
05AC5SOFTWAREASP B:613 , GLU B:639 , HOH D:816 , HOH D:917BINDING SITE FOR RESIDUE CA B 704
06AC6SOFTWAREASP B:614 , HOH B:813 , ASP D:614BINDING SITE FOR RESIDUE CA B 705
07AC7SOFTWAREGLU B:254 , ASP B:258 , ASP B:614 , HOH B:949 , GLU D:254 , ASP D:258 , ASP D:614 , HOH D:914BINDING SITE FOR RESIDUE TRS B 706
08AC8SOFTWAREGLU D:390 , HIS D:395 , ASP D:521BINDING SITE FOR RESIDUE BA D 701
09AC9SOFTWAREASP D:307 , PHE D:478 , GLU D:487 , HOH D:832 , HOH D:833 , HOH D:898BINDING SITE FOR RESIDUE CA D 702
10BC1SOFTWAREILE C:159 , VAL D:329 , ASP D:332 , TYR D:334 , GLU D:336 , HOH D:834BINDING SITE FOR RESIDUE CA D 703
11BC2SOFTWAREHOH B:815 , HOH B:947 , ASP D:613 , GLU D:639 , HOH D:899BINDING SITE FOR RESIDUE CA D 704
12BC3SOFTWAREGLU F:390 , HIS F:395 , ASP F:521 , HOH F:876 , HOH F:877BINDING SITE FOR RESIDUE BA F 701
13BC4SOFTWAREILE E:159 , VAL F:329 , ASP F:332 , TYR F:334 , GLU F:336 , HOH F:817BINDING SITE FOR RESIDUE CA F 702
14BC5SOFTWAREASP F:307 , PHE F:478 , GLU F:487 , HOH F:836 , HOH F:837BINDING SITE FOR RESIDUE CA F 703
15BC6SOFTWAREASP F:613 , GLU F:639BINDING SITE FOR RESIDUE CA F 704
16BC7SOFTWAREASP F:614 , ASP H:614BINDING SITE FOR RESIDUE CA F 705
17BC8SOFTWAREGLU F:254 , HOH F:810 , ASP H:258 , HOH H:911BINDING SITE FOR RESIDUE NA F 706
18BC9SOFTWAREASP F:616 , HOH F:829 , HOH F:929 , ASP H:255 , HOH H:921 , HOH H:922BINDING SITE FOR RESIDUE NA F 707
19CC1SOFTWAREASP F:258 , GLU H:254BINDING SITE FOR RESIDUE NA F 708
20CC2SOFTWAREGLU H:390 , HIS H:395 , ASP H:521 , HOH H:876 , HOH H:877BINDING SITE FOR RESIDUE BA H 701
21CC3SOFTWAREILE G:159 , VAL H:329 , ASP H:332 , TYR H:334 , GLU H:336 , HOH H:825BINDING SITE FOR RESIDUE CA H 702
22CC4SOFTWAREASP H:307 , PHE H:478 , GLU H:487 , GOL H:706 , HOH H:839BINDING SITE FOR RESIDUE CA H 703
23CC5SOFTWAREASP H:613 , GLU H:639BINDING SITE FOR RESIDUE CA H 704
24CC6SOFTWAREASP F:614 , HOH F:810 , HOH F:929 , GLU H:254 , ASP H:258BINDING SITE FOR RESIDUE MG H 705
25CC7SOFTWAREASP H:307 , GLU H:345 , PHE H:478 , TYR H:480 , ASN H:481 , VAL H:482 , PRO H:483 , CA H:703 , HOH H:839BINDING SITE FOR RESIDUE GOL H 706

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IEF)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Phe A:147 -Pro A:148
2Ser B:277 -Pro B:278
3Asp B:416 -Pro B:417
4Phe C:147 -Pro C:148
5Ser D:277 -Pro D:278
6Asp D:416 -Pro D:417
7Phe E:147 -Pro E:148
8Ser F:277 -Pro F:278
9Asp F:416 -Pro F:417
10Phe G:147 -Pro G:148
11Ser H:277 -Pro H:278
12Asp H:416 -Pro H:417

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IEF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IEF)

(-) Exons   (0, 0)

(no "Exon" information available for 4IEF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:192
                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeee..eeeeeee....eeeeeee..eeeeeee.................eeeeee....eeeeeeeeeeeeeee................hhhhh....hhhhhh........eee...eee..eeeeeeee..eeee....eeeeeeeeeeeeeeeeee..........hhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ief A  31 RNPQVRLLSAEQSMSKVQFRMDNLQFTGVQTSKGVAQVPTFTEGVNISEKGTPILPILSRSLAVSETRAMKVEVVSSKFIEKKDVLIAPSKGVISRAENPDQIPYVYGQSYNEDKFFPGEIATLSDPFILRDVRGQVVNFAPLQYNPVTKTLRIYTEIVVAVSETAEAGQNTISTFTGFEDIYKSVFMNYEA 227
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200   ||  215       225  
                                                                                                                                                                                                       204|                 
                                                                                                                                                                                                        210                 


Chain B from PDB  Type:PROTEIN  Length:423
                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4iefb1 B:239-579 automated matches                                                                                                                                                                                                                                                                                                                  d4iefb2 B:580-661 automated matches                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeehhhhh..hhhhhhhhhhh..eeeeeehhhhh...hhhhhhhhhhhhhh.....eeeeeee........eee..eeehhhhhh..........eeeee...hhhhhhhhhhhhhhhhhh.........eeeeee.......hhhhhhhhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhh..eeeee.............hhhhhhhh.......eeeee............hhhhhhhhhee..ee....eeeee......hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee................ee...eee....eeeeee.....eeeeee..eeeeeee....eeeee.........eeeeeee......eeeeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ief B 239 GRMIVIVPKKYEEDIEDFVDWKNQRGLRTEVKVAEDIASPVTANAIQQFVKQEYEKEGNDLTYVLLVGDHKDIPAKITPGIKSDQVYGQIVGNDHYNEVFIGRFSCESKEDLKTQIDRTIHYERNITTEDKWLGQALCIASAEGGPSADNGESDIQHENIIANLLTQYGYTKIIKCYDPGVTPKNIIDAFNGGISLANYTGHGSETAWGTSHFGTTHVKQLTNSNQLPFIFDVAcVNGDFLYNVPCFAEALMRAQKDGKPTGTVAIIASTINQSWASPMRGQDEMNEILCEKHPNNIKRTFGGVTMNGMFAMVEKYKKDGEKMLDTWTVFGDPSLLVRTLVPTKMQVTAPANISASAQTFEVACDYNGAIATLSDDGDMVGTAIVKDGKAIIKLNESIADETNLTLTVVGYNKVTVIKDVKVE 661
                                   248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468    |  478       488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658   
                                                                                                                                                                                                                                                                    473-CSD                                                                                                                                                                                        


Chain C from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee...eeeeeee....eeeeeee..eeeeeee.................eeeeee....eeeeeeeeeeeeeee................hhhhh....hhhhhh........eee...eee..eeeeeeee..eeee....eeeeeeeeeeeeeeeeee..........hhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ief C  30 GRNPQVRLLSAEQSMSKVQFRMDNLQFTGVQTSKGVAQVPTFTEGVNISEKGTPILPILSRSLAVSETRAMKVEVVSSKFIEKKDVLIAPSKGVISRAENPDQIPYVYGQSYNEDKFFPGEIATLSDPFILRDVRGQVVNFAPLQYNPVTKTLRIYTEIVVAVSETAEAGQNTISLFTGFEDIYKSVFMNYEATR 229
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199     ||214       224     
                                                                                                                                                                                                         205|                  
                                                                                                                                                                                                          211                  


Chain D from PDB  Type:PROTEIN  Length:424
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4iefd1 D:238-579 automated matches                                                                                                                                                                                                                                                                                                                   d4iefd2 D:580-661 automated matches                                                SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeehhhhh..hhhhhhhhhhh..eeeeeehhhhh...hhhhhhhhhhhhhh.....eeeeeee........eee..eeehhhhhh..........eeeee...hhhhhhhhhhhhhhhhhh.........eeeeee.......hhhhhhhhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhh..eeeee................hhhhh.......eeeee............hhhhhhhhhee..ee....eeeee......hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee................ee...eee....eeeeee.....eeeeee..eeeeeee....eeeee.........eeeeeee......eeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ief D 238 NGRMIVIVPKKYEEDIEDFVDWKNQRGLRTEVKVAEDIASPVTANAIQQFVKQEYEKEGNDLTYVLLVGDHKDIPAKITPGIKSDQVYGQIVGNDHYNEVFIGRFSCESKEDLKTQIDRTIHYERNITTEDKWLGQALCIASAEGGPSADNGESDIQHENIIANLLTQYGYTKIIKCYDPGVTPKNIIDAFNGGISLANYTGHGSETAWGTSHFGTTHVKQLTNSNQLPFIFDVAcVNGDFLYNVPCFAEALMRAQKDGKPTGTVAIIASTINQSWASPMRGQDEMNEILCEKHPNNIKRTFGGVTMNGMFAMVEKYKKDGEKMLDTWTVFGDPSLLVRTLVPTKMQVTAPANISASAQTFEVACDYNGAIATLSDDGDMVGTAIVKDGKAIIKLNESIADETNLTLTVVGYNKVTVIKDVKVE 661
                                   247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467     | 477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657    
                                                                                                                                                                                                                                                                     473-CSD                                                                                                                                                                                        


Chain E from PDB  Type:PROTEIN  Length:194
                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee....eeeeee....eeeeeee..eeeeeee.................eeeeee....eeeeeeeeeeeeeee................hhhhh....hhhhhh........eee...eee..eeeeeeee..eeee....eeeeeeeeeeeeeeeeee..........hhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ief E  30 GRNPQVRLLSAEQSMSKVQFRMDNLQFTGVQTSKGVAQVPTFTEGVNISEKGTPILPILSRSLAVSETRAMKVEVVSSKFIEKKDVLIAPSKGVISRAENPDQIPYVYGQSYNEDKFFPGEIATLSDPFILRDVRGQVVNFAPLQYNPVTKTLRIYTEIVVAVSETAEAGQNTISLFTGFEDIYKSVFMNYEAT 228
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199     ||214       224    
                                                                                                                                                                                                         205|                 
                                                                                                                                                                                                          211                 


Chain F from PDB  Type:PROTEIN  Length:424
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4ieff1 F:238-579 automated matches                                                                                                                                                                                                                                                                                                                   d4ieff2 F:580-661 automated matches                                                SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeehhhhh..hhhhhhhhhhh..eeeeeehhhhh...hhhhhhhhhhhhhhhhhhheeeeeee........eee..eeehhhhhh..........eeeee...hhhhhhhhhhhhhhhhhh.........eeeeee.......hhhhhhhhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhh..eeeee................hhhhh.......eeeee............hhhhhhhhhee..ee....eeeee......hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee................ee...eee....eeeeee.....eeeeee..eeeeeee....eeeee.........eeeeeee......eeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ief F 238 NGRMIVIVPKKYEEDIEDFVDWKNQRGLRTEVKVAEDIASPVTANAIQQFVKQEYEKEGNDLTYVLLVGDHKDIPAKITPGIKSDQVYGQIVGNDHYNEVFIGRFSCESKEDLKTQIDRTIHYERNITTEDKWLGQALCIASAEGGPSADNGESDIQHENIIANLLTQYGYTKIIKCYDPGVTPKNIIDAFNGGISLANYTGHGSETAWGTSHFGTTHVKQLTNSNQLPFIFDVAcVNGDFLYNVPCFAEALMRAQKDGKPTGTVAIIASTINQSWASPMRGQDEMNEILCEKHPNNIKRTFGGVTMNGMFAMVEKYKKDGEKMLDTWTVFGDPSLLVRTLVPTKMQVTAPANISASAQTFEVACDYNGAIATLSDDGDMVGTAIVKDGKAIIKLNESIADETNLTLTVVGYNKVTVIKDVKVE 661
                                   247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467     | 477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657    
                                                                                                                                                                                                                                                                     473-CSD                                                                                                                                                                                        


Chain G from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..eeeeeee....eeeeeee..eeeeeee.................eeeeee....eeeeeeeeeeeeeee................hhhhh....hhhhhh........eee...eee..eeeeeeee..eeee....eeeeeeeeeeeeeeeeee.........hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ief G  31 RNPQVRLLSAEQSMSKVQFRMDNLQFTGVQTSKGVAQVPTFTEGVNISEKGTPILPILSRSLAVSETRAMKVEVVSSKFIEKKDVLIAPSKGVISRAENPDQIPYVYGQSYNEDKFFPGEIATLSDPFILRDVRGQVVNFAPLQYNPVTKTLRIYTEIVVAVSETAEAGQNTISFTGFEDIYKSVFMNYE 226
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200   ||  216       226
                                                                                                                                                                                                       204|               
                                                                                                                                                                                                        211               


Chain H from PDB  Type:PROTEIN  Length:424
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4iefh1 H:238-579 automated matches                                                                                                                                                                                                                                                                                                                   d4iefh2 H:580-661 automated matches                                                SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeehhhhh..hhhhhhhhhhh..eeeeeehhhhh...hhhhhhhhhhhhhh.....eeeeeee........eee..eeehhhhhh..........eeeee...hhhhhhhhhhhhhhhhhh.........eeeeee.......hhhhhhhhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhh..eeeee.............hhhhhhhh.......eeeee............hhhhhhhhhee..ee....eeeee......hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeee................ee...eee....eeeeee.....eeeeee..eeeeeee....eeeee.........eeeeeee......eeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ief H 238 NGRMIVIVPKKYEEDIEDFVDWKNQRGLRTEVKVAEDIASPVTANAIQQFVKQEYEKEGNDLTYVLLVGDHKDIPAKITPGIKSDQVYGQIVGNDHYNEVFIGRFSCESKEDLKTQIDRTIHYERNITTEDKWLGQALCIASAEGGPSADNGESDIQHENIIANLLTQYGYTKIIKCYDPGVTPKNIIDAFNGGISLANYTGHGSETAWGTSHFGTTHVKQLTNSNQLPFIFDVAcVNGDFLYNVPCFAEALMRAQKDGKPTGTVAIIASTINQSWASPMRGQDEMNEILCEKHPNNIKRTFGGVTMNGMFAMVEKYKKDGEKMLDTWTVFGDPSLLVRTLVPTKMQVTAPANISASAQTFEVACDYNGAIATLSDDGDMVGTAIVKDGKAIIKLNESIADETNLTLTVVGYNKVTVIKDVKVE 661
                                   247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467     | 477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657    
                                                                                                                                                                                                                                                                     473-CSD
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IEF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IEF)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

 Visualization

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        CPG2_PORGI | P95493: 1cvr 5ag8 5ag9 5hfs

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(no "Related Entries Specified in the PDB File" available for 4IEF)