4IDF - JenaLib

Title :   STRUCTURE OF THE FRAGARIA X ANANASSA ENONE OXIDOREDUCTASE IN COMPLEX WITH NADPH AND HMF

Authors :   A. Schiefner, A. Skerra

Date :   12 Dec 12 (Deposition) - 17 Apr 13 (Release) - 26 Nov 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.55

Chains :   Asym./Biol. Unit : A

Keywords :   Medium Chain Dehydrogenase/Reductase Family, Zinc-Independent, Rossmann Fold, Enone Oxidoreductase, Furaneol, Hydride Transfer, Nadph, Nadh, Hmf, 4-Hydroxy-5-Methyl-3(2H)-Furanone, Norfuraneol, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Schiefner, Q. Sinz, I. Neumaier, W. Schwab, A. Skerra
Structural Basis For The Enzymatic Formation Of The Key Strawberry Flavor Compound 4-Hydroxy-2, 5-Dimethyl-3(2H)-Furanone
J. Biol. Chem. V. 288 16815 2013
PubMed-ID: 23589283 | Reference-DOI: 10.1074/JBC.M113.453852

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 5)

Sites (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PRO A:55 , LYS A:59 , LEU A:146 , THR A:150 , GLY A:170 , ALA A:172 , GLY A:173 , GLY A:174 , VAL A:175 , THR A:195 , SER A:197 , LYS A:200 , TYR A:215 , ALA A:233 , VAL A:234 , ILE A:253 , VAL A:254 , PHE A:264 , VAL A:265 , LEU A:266 , SER A:310 , ARG A:311 , ALA A:312 , 4XX A:402 , HOH A:502 , HOH A:503 , HOH A:504 , HOH A:506 , HOH A:507 , HOH A:508 , HOH A:584 , HOH A:661 , HOH A:706 , HOH A:765 , HOH A:805 , HOH A:938	BINDING SITE FOR RESIDUE NDP A 401
2	AC2	SOFTWARE	VAL A:56 , LYS A:59 , NDP A:401 , HOH A:501 , HOH A:863	BINDING SITE FOR RESIDUE 4XX A 402
3	AC3	SOFTWARE	ARG A:127 , LYS A:269 , SER A:271 , HOH A:538 , HOH A:813	BINDING SITE FOR RESIDUE SO4 A 403
4	AC4	SOFTWARE	VAL A:49 , GLY A:163 , SER A:190 , ASP A:228 , LYS A:245 , HOH A:581 , HOH A:636 , HOH A:781	BINDING SITE FOR RESIDUE EDO A 404
5	AC5	SOFTWARE	SER A:137 , PHE A:138 , ILE A:139 , HOH A:916 , HOH A:918	BINDING SITE FOR RESIDUE EDO A 405

SS Bonds (0, 0)

Cis Peptide Bonds (5, 5)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:321
                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh..eeeeee.....hhhhhheeeeeee.......eeeeeeeeee.hhhhhhhhh..hhhhh.........eeeeeeeee...........eeeee.................eeeee...eee.....hhhhhhhhhhhhhhhhhhhhhh......eeeee.....hhhhhhhhhhhh....eeeeeehhhhhhhhhhhh..eeee....hhhhh...eeeeee...hhhhhh..eeeeeeeee.........ee.....hhhhhhhhhhhhhhh............hhhhhhhhhhhhh........ee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4idf A   1 GAAAPSESIPSVNKAWVYSEYGKTSDVLKFDPSVAVPEIKEDQVLIKVVAASLNPVDFKRALGYFKDTDSPLPTIPGYDVAGVVVKVGSQVTKFKVGDEVYGDLNETALVNPTRFGSLAEYTAADERVLAHKPKNLSFIEAASLPLAIETAHEGLERAELSAGKSVLVLGGAGGVGTHIIQLAKHVFGASKVAATASTKKLDLLRTLGADLAIDYTKENFEDLPEKFDVVYDAVGETDKAVKAVKEGGKVVTIVGPATPPAILFVLTSKGSVLEKLKPYLESGKVKPVLDPTSPYPFTKVVEAFGYLESSRATGKVVVYPI 321
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (3, 6)

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	Cis Peptide Bonds
		Gly A:255 - Pro A:256	[ RasMol ]
		Leu A:72 - Pro A:73	[ RasMol ]
		Pro A:259 - Pro A:260	[ RasMol ]
		Ser A:293 - Pro A:294	[ RasMol ]
		Tyr A:319 - Pro A:320	[ RasMol ]

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