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(-) Description

Title :  CRYSTAL STRUCTURE OF RABBIT LDHA IN COMPLEX WITH AP28161 AND AP28122
 
Authors :  T. Zhou, A. Kohlmann, Z. G. Stephan, F. Li, L. Commodore, M. T. Greenfiel W. C. Shakespeare, X. Zhu, D. C. Dalgarno
Date :  05 Dec 12  (Deposition) - 23 Jan 13  (Release) - 27 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Cancer, Fragment, Inhibitor, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Kohlmann, S. G. Zech, F. Li, T. Zhou, R. M. Squillace, L. Commodore, M. T. Greenfield, X. Lu, D. P. Miller, W. S. Huang, J. Qi, R. M. Thomas, Y. Wang, S. Zhang, R. Dodd, S. Liu, R. Xu, Y. Xu, J. J. Miret, V. Rivera, T. Clackson, W. C. Shakespeare, X. Zhu, D. C. Dalgarno
Fragment Growing And Linking Lead To Novel Nanomolar Lactat Dehydrogenase Inhibitors.
J. Med. Chem. V. 56 1023 2013
PubMed-ID: 23302067  |  Reference-DOI: 10.1021/JM3014844

(-) Compounds

Molecule 1 - L-LACTATE DEHYDROGENASE A CHAIN
    Chains: A, B, C, D, E, F, G, H
    EC Number: 1.1.1.27
    Organism Common: RABBIT
    Organism Scientific: ORYCTOLAGUS CUNICULUS
    Organism Taxid: 9986
    Synonym: LACTATE DEHYDROGENASE A, LDHA, LDH-A, LDH MUSCLE SUBUNIT, LDH-M

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 16)

Asymmetric Unit (2, 16)
No.NameCountTypeFull Name
11E58Ligand/Ion6-[3-(CARBOXYMETHOXY)-5-FLUOROPHENYL]PYRIDINE-3-CARBOXYLIC ACID
21E68Ligand/Ion6-({2-[(5-CHLORO-4-{[(2S)-2,3-DIHYDROXYPROPYL]OXY}-2-METHOXYPHENYL)AMINO]-2-OXOETHYL}SULFANYL)PYRIDINE-3-CARBOXYLIC ACID
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
11E54Ligand/Ion6-[3-(CARBOXYMETHOXY)-5-FLUOROPHENYL]PYRIDINE-3-CARBOXYLIC ACID
21E64Ligand/Ion6-({2-[(5-CHLORO-4-{[(2S)-2,3-DIHYDROXYPROPYL]OXY}-2-METHOXYPHENYL)AMINO]-2-OXOETHYL}SULFANYL)PYRIDINE-3-CARBOXYLIC ACID
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
11E54Ligand/Ion6-[3-(CARBOXYMETHOXY)-5-FLUOROPHENYL]PYRIDINE-3-CARBOXYLIC ACID
21E64Ligand/Ion6-({2-[(5-CHLORO-4-{[(2S)-2,3-DIHYDROXYPROPYL]OXY}-2-METHOXYPHENYL)AMINO]-2-OXOETHYL}SULFANYL)PYRIDINE-3-CARBOXYLIC ACID

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:26 , GLY A:28 , ASP A:51 , VAL A:52 , THR A:94 , ALA A:95 , GLY A:96 , ILE A:115 , PHE A:118 , ILE A:119 , 1E5 A:402 , HOH A:517BINDING SITE FOR RESIDUE 1E6 A 401
02AC2SOFTWAREGLY A:28 , ALA A:29 , VAL A:30 , THR A:94 , VAL A:135 , SER A:136 , ASN A:137 , ARG A:168 , ALA A:237 , THR A:247 , 1E6 A:401 , HOH A:509 , HOH A:518 , HOH A:546BINDING SITE FOR RESIDUE 1E5 A 402
03AC3SOFTWAREGLY B:26 , GLY B:28 , ASP B:51 , VAL B:52 , THR B:94 , ALA B:95 , GLY B:96 , ARG B:111 , ILE B:115 , PHE B:118 , ILE B:119 , 1E5 B:402BINDING SITE FOR RESIDUE 1E6 B 401
04AC4SOFTWAREGLY B:28 , ALA B:29 , VAL B:30 , THR B:94 , VAL B:135 , SER B:136 , ASN B:137 , LEU B:164 , ARG B:168 , ALA B:237 , THR B:247 , 1E6 B:401 , HOH B:520 , HOH B:529 , HOH B:532BINDING SITE FOR RESIDUE 1E5 B 402
05AC5SOFTWAREGLY C:26 , GLY C:28 , ASP C:51 , VAL C:52 , THR C:94 , ALA C:95 , GLY C:96 , ARG C:111 , ILE C:115 , PHE C:118 , ILE C:119 , 1E5 C:402 , HOH C:534BINDING SITE FOR RESIDUE 1E6 C 401
06AC6SOFTWAREGLY C:28 , ALA C:29 , VAL C:30 , THR C:94 , VAL C:135 , SER C:136 , ASN C:137 , ARG C:168 , ALA C:237 , THR C:247 , 1E6 C:401 , HOH C:510 , HOH C:512BINDING SITE FOR RESIDUE 1E5 C 402
07AC7SOFTWAREGLY D:28 , ASP D:51 , VAL D:52 , THR D:94 , ALA D:95 , GLY D:96 , ARG D:111 , ASN D:114 , ILE D:115 , PHE D:118 , ILE D:119 , 1E5 D:402 , HOH D:535BINDING SITE FOR RESIDUE 1E6 D 401
08AC8SOFTWAREGLY D:28 , ALA D:29 , VAL D:30 , THR D:94 , VAL D:135 , SER D:136 , ASN D:137 , LEU D:164 , ARG D:168 , ALA D:237 , THR D:247 , 1E6 D:401 , HOH D:510 , HOH D:519BINDING SITE FOR RESIDUE 1E5 D 402
09AC9SOFTWAREGLY E:26 , GLY E:28 , ASP E:51 , VAL E:52 , THR E:94 , ALA E:95 , GLY E:96 , ARG E:98 , ARG E:111 , ASN E:114 , ILE E:115 , PHE E:118 , ILE E:119 , 1E5 E:402BINDING SITE FOR RESIDUE 1E6 E 401
10BC1SOFTWAREGLY E:28 , ALA E:29 , VAL E:30 , THR E:94 , VAL E:135 , SER E:136 , ASN E:137 , ARG E:168 , ALA E:237 , THR E:247 , 1E6 E:401 , HOH E:506 , HOH E:515BINDING SITE FOR RESIDUE 1E5 E 402
11BC2SOFTWAREGLY F:26 , VAL F:27 , GLY F:28 , ASP F:51 , VAL F:52 , THR F:94 , ALA F:95 , GLY F:96 , ARG F:98 , ARG F:111 , ASN F:114 , ILE F:115 , PHE F:118 , 1E5 F:402 , HOH F:508BINDING SITE FOR RESIDUE 1E6 F 401
12BC3SOFTWAREGLY F:28 , ALA F:29 , VAL F:30 , THR F:94 , VAL F:135 , SER F:136 , ASN F:137 , ARG F:168 , ALA F:237 , THR F:247 , 1E6 F:401 , HOH F:509BINDING SITE FOR RESIDUE 1E5 F 402
13BC4SOFTWAREVAL G:25 , GLY G:26 , GLY G:28 , ASP G:51 , VAL G:52 , THR G:94 , ALA G:95 , GLY G:96 , ARG G:111 , ILE G:115 , PHE G:118 , ILE G:119 , 1E5 G:402 , HOH G:522BINDING SITE FOR RESIDUE 1E6 G 401
14BC5SOFTWAREGLY G:28 , VAL G:30 , THR G:94 , VAL G:135 , SER G:136 , ASN G:137 , LEU G:164 , ARG G:168 , ALA G:237 , THR G:247 , 1E6 G:401 , HOH G:511 , HOH G:539BINDING SITE FOR RESIDUE 1E5 G 402
15BC6SOFTWAREGLY H:26 , GLY H:28 , ASP H:51 , VAL H:52 , THR H:94 , ALA H:95 , GLY H:96 , ARG H:111 , ILE H:115 , PHE H:118 , ILE H:119 , 1E5 H:402BINDING SITE FOR RESIDUE 1E6 H 401
16BC7SOFTWAREGLY H:28 , ALA H:29 , VAL H:30 , THR H:94 , VAL H:135 , SER H:136 , ASN H:137 , ARG H:168 , ALA H:237 , THR H:247 , 1E6 H:401 , HOH H:513 , HOH H:527BINDING SITE FOR RESIDUE 1E5 H 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4I9N)

(-) Cis Peptide Bonds  (10, 10)

Asymmetric Unit
No.Residues
1Asn A:137 -Pro A:138
2Asn B:137 -Pro B:138
3Asn C:137 -Pro C:138
4Glu D:101 -Gly D:102
5Asn D:137 -Pro D:138
6Asn E:137 -Pro E:138
7Gly F:102 -Glu F:103
8Asn F:137 -Pro F:138
9Asn G:137 -Pro G:138
10Asn H:137 -Pro H:138

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4I9N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4I9N)

(-) Exons   (0, 0)

(no "Exon" information available for 4I9N)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4i9na1 A:1-159 automated matches                                                                                                                       d4i9na2 A:160-331 automated matches                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhheee..........eeeee..hhhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhhhhhhh...eeeee.hhhhhh...eeee.......hhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhh.hhh.eee..hhhhhhhhhhhhhhhhh.hhh.ee..ee.......ee.hhh.ee..eehhhhh...........hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...eeeeeeee...........eeeeeeeee..eeeeee....hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4i9n A   1 AALKDQLIHNLLKEEHVPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGARLNLVQRNVNIFKFIIPNVVKYSPHCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWILGEHGDSSVPVWSGMNVAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLKGYTTWAIGLSVADLAESIMKNLRRVHPISTMLKGLYGIKEDVFLSVPCVLGQNGISDVVKVTLTSEEEAHLKKSADTLWGIQKELQF 331
                                    10        20        30        40        50        60        70        80        90       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327    
                                                                                                                            98|                                                                                                                                                                                                                                 
                                                                                                                            106                                                                                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4i9nb1 B:1-159 automated matches                                                                                                                       d4i9nb2 B:160-331 automated matches                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhheee..........eeeee..hhhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhhhhhhh...eeee..hhhhhh.eeeeee......hhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhh.hhh.eee..hhhhhhhhhhhhhhhhh.hhh.ee..ee.......ee.hhh.ee..eehhhhh..........hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..eeeeeeee...........eeeeeeeee..eeeeee....hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4i9n B   1 AALKDQLIHNLLKEEHVPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGARLNLVQRNVNIFKFIIPNVVKYSPHCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWILGEHGDSSVPVWSGMNVAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLKGYTTWAIGLSVADLAESIMKNLRRVHPISTMLKGLYGIKEDVFLSVPCVLGQNGISDVVKVTLTSEEEAHLKKSADTLWGIQKELQF 331
                                    10        20        30        40        50        60        70        80        90      |106|      117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327    
                                                                                                                           97| ||                                                                                                                                                                                                                               
                                                                                                                           104 ||                                                                                                                                                                                                                               
                                                                                                                             106|                                                                                                                                                                                                                               
                                                                                                                              108                                                                                                                                                                                                                               


Chain C from PDB  Type:PROTEIN  Length:328
                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4i9nc1 C:1-159 automated matches                                                                                                                           d4i9nc2 C:160-331 automated matches                                                                                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhheee..........eeeee..hhhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhhhhhhh....eee..hhhhhh...eeee.......hhhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhh.hhh.eee..hhhhhhhhhhhhhhhhh.hhhhh...ee.......ee.....ee..eehhhhh...........hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...eeeeeeee...........eeeeeeeee..eeeeee....hhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i9n C   1 AALKDQLIHNLLKEEHVPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGARGESRLNLVQRNVNIFKFIIPNVVKYSPHCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWILGEHGDSSVPVWSGMNVAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLKGYTTWAIGLSVADLAESIMKNLRRVHPISTMLKGLYGIKEDVFLSVPCVLGQNGISDVVKVTLTSEEEAHLKKSADTLWGIQKELQF 331
                                    10        20        30        40        50        60        70        80        90       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323        
                                                                                                                            98|                                                                                                                                                                                                                                     
                                                                                                                            102                                                                                                                                                                                                                                     


Chain D from PDB  Type:PROTEIN  Length:331
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains d4i9nd1 D:1-159 automated matches                                                                                                                              d4i9nd2 D:160-331 automated matches                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhheee..........eeeee..hhhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhhhhhhh...eeee..hhhhhh...eeee..........hhhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhh.hhh.eee..hhhhhhhhhhhhhhhhh.hhh.ee..eee.....eee.hhh.ee..eehhhhh...........hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...eeeeeeee...........eeeeeeeee..eeeeee....hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i9n D   1 AALKDQLIHNLLKEEHVPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWILGEHGDSSVPVWSGMNVAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLKGYTTWAIGLSVADLAESIMKNLRRVHPISTMLKGLYGIKEDVFLSVPCVLGQNGISDVVKVTLTSEEEAHLKKSADTLWGIQKELQF 331
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330 


Chain E from PDB  Type:PROTEIN  Length:331
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains d4i9ne1 E:1-159 automated matches                                                                                                                              d4i9ne2 E:160-331 automated matches                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhheee..........eeeee..hhhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhhhhhhh...eeee..hhhhhh...eeee..........hhhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhh.hhh.eee..hhhhhhhhhhhhhhhhh.hhh.ee..eee.....eee.hhh.ee..eehhhhh...........hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...eeeeeeee..hhhhh....eeeeeeeee..eeeeee....hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i9n E   1 AALKDQLIHNLLKEEHVPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWILGEHGDSSVPVWSGMNVAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLKGYTTWAIGLSVADLAESIMKNLRRVHPISTMLKGLYGIKEDVFLSVPCVLGQNGISDVVKVTLTSEEEAHLKKSADTLWGIQKELQF 331
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330 


Chain F from PDB  Type:PROTEIN  Length:329
                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d4i9nf1 F:1-159 automated matches                                                                                                                            d4i9nf2 F:160-331 automated matches                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhheee........eeeee..hhhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhhhhhhh...eeeee.hhhhhh...eeee...........hhhhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhh.hhh.eee..hhhhhhhhhhhhhhhhh.hhh.ee..ee.......ee.hhh.ee..eehhhhh...........hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...eeeeeeee...........eeeeeeeee..eeeeee....hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i9n F   1 AALKDQLIHNLLKEVPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWILGEHGDSSVPVWSGMNVAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLKGYTTWAIGLSVADLAESIMKNLRRVHPISTMLKGLYGIKEDVFLSVPCVLGQNGISDVVKVTLTSEEEAHLKKSADTLWGIQKELQF 331
                                    10   ||   22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322         
                                        14|                                                                                                                                                                                                                                                                                                                          
                                         17                                                                                                                                                                                                                                                                                                                          


Chain G from PDB  Type:PROTEIN  Length:328
                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4i9ng1 G:1-159 automated matches                                                                                                                           d4i9ng2 G:160-331 automated matches                                                                                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhheee..........eeeee..hhhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhhhhhhh...eeee..hhhhhh...eeee..........hhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhh.hhh.eee..hhhhhhhhhhhhhhhhh.hhh.ee..ee.......ee.hhh.ee..eehhhhh...........hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...eeeeeeee...........eeeeeeeee..eeeeee....hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i9n G   1 AALKDQLIHNLLKEEHVPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGARQESRLNLVQRNVNIFKFIIPNVVKYSPHCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWILGEHGDSSVPVWSGMNVAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLKGYTTWAIGLSVADLAESIMKNLRRVHPISTMLKGLYGIKEDVFLSVPCVLGQNGISDVVKVTLTSEEEAHLKKSADTLWGIQKELQF 331
                                    10        20        30        40        50        60        70        80        90       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323        
                                                                                                                             99|                                                                                                                                                                                                                                    
                                                                                                                             103                                                                                                                                                                                                                                    


Chain H from PDB  Type:PROTEIN  Length:325
                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4i9nh1 H:1-159 automated matches                                                                                                                        d4i9nh2 H:160-331 automated matches                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhheee..........eeeee..hhhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhhhhhhh....eeee.hhhhhh...eeee.......hhhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhh.hhh.eee..hhhhhhhhhhhhhhhhh.hhhhh...eee.....eee.hhh.ee..eehhhhh...........hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh...eeeeeeee...........eeeeeeeee..eeeeee....hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4i9n H   1 AALKDQLIHNLLKEEHVPQNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGKDYSVTANSKLVIITAGASRLNLVQRNVNIFKFIIPNVVKYSPHCKLLVVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWILGEHGDSSVPVWSGMNVAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLKGYTTWAIGLSVADLAESIMKNLRRVHPISTMLKGLYGIKEDVFLSVPCVLGQNGISDVVKVTLTSEEEAHLKKSADTLWGIQKELQF 331
                                    10        20        30        40        50        60        70        80        90      |106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326     
                                                                                                                           97|                                                                                                                                                                                                                                   
                                                                                                                           104
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 16)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

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(no "CATH Domain" information available for 4I9N)

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(-) Gene Ontology  (8, 8)

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  4i9n
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  LDHA_RABIT | P13491
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  1.1.1.27
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LDHA_RABIT | P13491: 3h3f 4i8x 4i9h 4i9u 5kkc 5nqb 5nqq

(-) Related Entries Specified in the PDB File

4i8x 4i9h 4i9u