4HZX - JenaLib

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Biol. Unit 1 - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF INFLUENZA A NEURAMINIDASE N3 COMPLEXED WITH OSELTAMIVIR

Authors :   Q. Li, J. Qi, C. J. Vavricka, G. F. Gao

Date :   15 Nov 12 (Deposition) - 06 Nov 13 (Release) - 06 Nov 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A
Biol. Unit 1: A  (4x)

Keywords :   Neuraminidase, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Q. Li, J. Qi, Y. Wu, H. Kiyota, K. Tanaka, Y. Suhara, H. Ohrui, Y. Suzuki, C. J. Vavricka, G. F. Gao
Functional And Structural Analysis Of Influenza Virus Neuraminidase N3 Offers Further Insight Into The Mechanisms Of Oseltamivir Resistance.
J. Virol. V. 87 10016 2013
PubMed-ID: 23824808 | Reference-DOI: 10.1128/JVI.01129-13

Molecule 1 - NEURAMINIDASE
	Chains	:	A
	Engineered	:	YES
	Expression System Cell	:	HI5
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	UNP RESIDUES 83-469
	Gene	:	NA
	Organism Scientific	:	INFLUENZA A VIRUS
	Organism Taxid	:	489926

		1
Asymmetric Unit	:	A
Biological Unit 1 (4x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 8)

No.	Name	Count	Type	Full Name
1	CA	2	Ligand/Ion	CALCIUM ION
2	FUC	2	Ligand/Ion	ALPHA-L-FUCOSE
3	G39	1	Ligand/Ion	(3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO-3-(PENTAN-3-YLOXY)CYCLOHEX-1-ENE-1-CARBOXYLIC ACID
4	NAG	3	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 1 (3, 24)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	FUC	8	Ligand/Ion	ALPHA-L-FUCOSE
3	G39	4	Ligand/Ion	(3R,4R,5S)-4-(ACETYLAMINO)-5-AMINO-3-(PENTAN-3-YLOXY)CYCLOHEX-1-ENE-1-CARBOXYLIC ACID
4	NAG	12	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:293 , GLY A:297 , ASP A:324 , GLY A:345 , PRO A:347 , HOH A:603	BINDING SITE FOR RESIDUE CA A 506
2	AC2	SOFTWARE	HOH A:940	BINDING SITE FOR RESIDUE CA A 507
3	AC3	SOFTWARE	ARG A:118 , GLU A:119 , ASP A:151 , ARG A:152 , TRP A:178 , ARG A:224 , GLU A:276 , ARG A:292 , ASN A:294 , ARG A:371 , TYR A:406 , HOH A:609 , HOH A:684 , HOH A:743	BINDING SITE FOR RESIDUE G39 A 508
4	AC4	SOFTWARE	ASN A:146 , LYS A:469 , HOH A:716 , HOH A:791 , HOH A:936	BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 146 RESIDUES 501 TO 503
5	AC5	SOFTWARE	ASP A:234 , ASN A:306 , ASN A:307 , GLU A:308 , HOH A:635 , HOH A:665 , HOH A:696 , HOH A:705 , HOH A:873	BINDING SITE FOR CHAIN A OF SUGAR BOUND TO ASN A 307 RESIDUES 504 TO 505

Asymmetric Unit

No.	Residues
1	A:92	-	A:417
2	A:124	-	A:129
3	A:175	-	A:193
4	A:183	-	A:230
5	A:232	-	A:237
6	A:278	-	A:291
7	A:280	-	A:289
8	A:318	-	A:337
9	A:421	-	A:447

Asymmetric Unit

No.	Residues
1	Thr A:325	-	Pro A:326
2	Asp A:330	-	Pro A:331
3	Gly A:346	-	Pro A:347
4	Arg A:430	-	Pro A:431

(no "SAP(SNP)/Variant" information available for 4HZX)

(no "PROSITE Motif" information available for 4HZX)

(no "Exon" information available for 4HZX)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4hzxa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeeee...hhhhh....eeeeeeeeee....eeeeeeeeeee..hhhhh..........eeeeee..........eeeee..eeeeee....eeeeeee......eeeeee..eeeeeee.......ee.....eee..eeeeeeee.......eeeeeeee..eeeeeee.........eeeeeee...eeeeee........eeeee....eeeeee...................................eeee..eeeeee.......eeeeeeeee.........eeeeeeeeeeeeee...eeeeeeee..eeeeeeeeeeeee..........eeeeeeeeeee.............hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4hzx A   82 FRPFKSPLPLCPFRGFFPFHKDNAIRLGENKDVIVTREPYVSCDNDNCWSFALAQGALLGTKHSNGTIKDRTPYRSLIRFPIGTAPVLGNYKEICIAWSSSSCFDGKEWMHVCMTGNDNDASAQIIYGGRMTDSIKSWRKDILRTQESECQCIDGTCVVAVTDGPAANSADYRVYWIREGKIIKYENVPKTKIQHLEECSCYVDIDVYCICRDNWKGSNRPWMRINNETILETGYVCSKFHSDTPRPADPSTMSCDSPSNVNGGPGVKGFGFKAGDDVWLGRTVSTSGRSGFEIIKVTEGWINSPNHVKSITQTLVSNNDWSGYSGSFIVKAKDCFQPCFYVELIRGRPNKNDDVSWTSNSIVTFCGLDNEPGSGNWPDGSNIGFMPK  469
                                    91       101       111       121       131       141       151       161      171A       180       190       200       210       220       230       240       250       260       270 |     279     ||290       300       311       321       331   ||  342       352       362       372       382       392       402       412       422      432A       441       451       461        
                                                                                                                  171A                                                                                                  272A           285|                   309|                     335|                                                                                           432A                                      
                                                                                                                                                                                                                                        287                    311                      337

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: 6-bladed beta-propeller (327)

Superfamily: Sialidases (238)

Family: automated matches (54)

Protein domain: automated matches (54)

Influenza A virus [TaxId: 11320] (31)

d4hzxa_

(no "CATH Domain" information available for 4HZX)

(no "Pfam Domain" information available for 4HZX)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Ligands, Modified Residues, Ions
		CA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		FUC	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		G39	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NAG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Arg A:430 - Pro A:431	[ RasMol ]
		Asp A:330 - Pro A:331	[ RasMol ]
		Gly A:346 - Pro A:347	[ RasMol ]
		Thr A:325 - Pro A:326	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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	4hzx
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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
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	A9YN63_9INFA \| A9YN63	:	4hzv 4hzw 4hzy 4hzz 4i00

3ti6	CRYSTAL STRUCTURE OF 2009 PANDEMIC H1N1 NEURAMINIDASE COMPLEXED WITH OSELTAMIVIR
4hzv
4hzw
4hzy
4hzz
4i00

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 8)

Sites (5, 5)

SS Bonds (9, 9)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (15, 15)

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