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(-) Description

Title :  CRYSTAL STRUCTURE OF ACK1 KINASE DOMAIN WITH C-TERMINAL SH3 DOMAIN
 
Authors :  K. S. Gajiwala
Date :  15 Nov 12  (Deposition) - 06 Feb 13  (Release) - 06 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.23
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Inactive State, Allostery, Dimerization, Oligomerization, Negative Regulation, Activation, Phosphotransfer, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. S. Gajiwala, K. Maegley, R. Ferre, Y. A. He, X. Yu
Ack1: Activation And Regulation By Allostery.
Plos One V. 8 53994 2013
PubMed-ID: 23342057  |  Reference-DOI: 10.1371/JOURNAL.PONE.0053994

(-) Compounds

Molecule 1 - ACTIVATED CDC42 KINASE 1
    Chains: A, B, C, D
    EC Number: 2.7.10.2, 2.7.11.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: PROTEIN KINASE AND SH3 DOMAINS (UNP RESIDUES 115-453)
    Gene: TNK2, ACK1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ACK1, ACK-1, TYROSINE KINASE NON-RECEPTOR PROTEIN 2

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4HZS)

(-) Sites  (0, 0)

(no "Site" information available for 4HZS)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HZS)

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Asp A:134 -Gly A:135
2Pro A:162 -Asp A:163
3Val A:164 -Leu A:165
4Pro A:199 -Pro A:200
5Asp B:134 -Gly B:135
6Pro B:162 -Asp B:163
7Val B:164 -Leu B:165
8Pro B:199 -Pro B:200
9Asp C:134 -Gly C:135
10Pro C:162 -Asp C:163
11Val C:164 -Leu C:165
12Pro C:199 -Pro C:200
13Asp D:134 -Gly D:135
14Pro D:162 -Asp D:163
15Val D:164 -Leu D:165
16Pro D:199 -Pro D:200

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HZS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HZS)

(-) Exons   (0, 0)

(no "Exon" information available for 4HZS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:319
                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhh.eee..........eeeeeeee.....eeeeeeee.......hhhhhhhhhhhhhhhhh........eeeee.....eeee......hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...hhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh...........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhh...eee.................eeeeee......eeeeee.....eeeee.hhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hzs A 115 QSLTCLIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPTDMRALQDFEEPDKLHIQMNDVITVIEGRAENYWWRGQNTRTLCVGPFPRNVVTSV 446
                                   124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274   ||  297       307       317       327       337       347       357       367       377       387       397       407       417       427       437         
                                                                                                                                                                                             278|                                                                                                                                                          
                                                                                                                                                                                              292                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:319
                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhh.eee..........eeeeeeee.....eeeeeeee.......hhhhhhhhhhhhhhhhh........eeeee.....eeee......hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...hhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh...........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhh...eee.................eeeeee......eeeeee.....eeeee.hhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hzs B 115 QSLTCLIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPTDMRALQDFEEPDKLHIQMNDVITVIEGRAENYWWRGQNTRTLCVGPFPRNVVTSV 446
                                   124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274   ||  297       307       317       327       337       347       357       367       377       387       397       407       417       427       437         
                                                                                                                                                                                             278|                                                                                                                                                          
                                                                                                                                                                                              292                                                                                                                                                          


Chain C from PDB  Type:PROTEIN  Length:319
                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhh.eee..........eeeeeeee.....eeeeeeee.......hhhhhhhhhhhhhhhhh........eeeee.....eeee......hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...hhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh...........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhh...eee.................eeeeee......eeeeee.....eeeee.hhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hzs C 115 QSLTCLIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPTDMRALQDFEEPDKLHIQMNDVITVIEGRAENYWWRGQNTRTLCVGPFPRNVVTSV 446
                                   124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274   ||  297       307       317       327       337       347       357       367       377       387       397       407       417       427       437         
                                                                                                                                                                                             278|                                                                                                                                                          
                                                                                                                                                                                              292                                                                                                                                                          


Chain D from PDB  Type:PROTEIN  Length:319
                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhh.eee..........eeeeeeee.....eeeeeeee.......hhhhhhhhhhhhhhhhh........eeeee.....eeee.....eehhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee...hhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh...........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhh..eee.................eeeeee......eeeeee.....eeeee.hhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hzs D 115 QSLTCLIGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPTDMRALQDFEEPDKLHIQMNDVITVIEGRAENYWWRGQNTRTLCVGPFPRNVVTSV 446
                                   124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274   ||  297       307       317       327       337       347       357       367       377       387       397       407       417       427       437         
                                                                                                                                                                                             278|                                                                                                                                                          
                                                                                                                                                                                              292
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HZS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HZS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HZS)

(-) Gene Ontology  (42, 42)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asp A:134 - Gly A:135   [ RasMol ]  
    Asp B:134 - Gly B:135   [ RasMol ]  
    Asp C:134 - Gly C:135   [ RasMol ]  
    Asp D:134 - Gly D:135   [ RasMol ]  
    Pro A:162 - Asp A:163   [ RasMol ]  
    Pro A:199 - Pro A:200   [ RasMol ]  
    Pro B:162 - Asp B:163   [ RasMol ]  
    Pro B:199 - Pro B:200   [ RasMol ]  
    Pro C:162 - Asp C:163   [ RasMol ]  
    Pro C:199 - Pro C:200   [ RasMol ]  
    Pro D:162 - Asp D:163   [ RasMol ]  
    Pro D:199 - Pro D:200   [ RasMol ]  
    Val A:164 - Leu A:165   [ RasMol ]  
    Val B:164 - Leu B:165   [ RasMol ]  
    Val C:164 - Leu C:165   [ RasMol ]  
    Val D:164 - Leu D:165   [ RasMol ]  
 
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  4hzs
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  ACK1_HUMAN | Q07912
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACK1_HUMAN | Q07912: 1cf4 1u46 1u4d 1u54 3eqp 3eqr 4ewh 4hzr 4id7

(-) Related Entries Specified in the PDB File

4hzr