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(-) Description

Title :  MOLECULAR BASIS OF VANCOMYCIN RESISTANCE TRANSFER IN STAPHYLOCOCCUS AUREUS
 
Authors :  J. S. Edwards
Date :  31 Oct 12  (Deposition) - 30 Jan 13  (Release) - 06 Mar 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.91
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Vancomycin Resistance Plasmid, Dna Relaxase, S. Aureus, Conjugative Transfer, Dna Hairpin, Hydrolase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. S. Edwards, L. Betts, M. L. Frazier, R. M. Pollet, S. M. Kwong, W. G. Walton, W. K. Ballentine, J. J. Huang, S. Habibi, M. Del Campo, J. L. Meier, P. B. Dervan, N. Firth, M. R. Redinbo
Molecular Basis Of Antibiotic Multiresistance Transfer In Staphylococcus Aureus.
Proc. Natl. Acad. Sci. Usa V. 110 2804 2013
PubMed-ID: 23359708  |  Reference-DOI: 10.1073/PNAS.1219701110

(-) Compounds

Molecule 1 - NICKING ENZYME
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCPD-LASSO
    Expression System Strain: BL21 AI
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: NES, NES FROM PLW1043
    Mutation: YES
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 1280
 
Molecule 2 - DNA (28-MER)
    Chains: B
    Engineered: YES
    Other Details: ORIT DNA HAIRPIN
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric/Biological Unit (4, 12)
No.NameCountTypeFull Name
1CA8Ligand/IonCALCIUM ION
2CL1Ligand/IonCHLORIDE ION
3MSE2Mod. Amino AcidSELENOMETHIONINE
4NI1Ligand/IonNICKEL (II) ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:123 , HIS A:131 , HIS A:133 , HOH A:309 , HOH A:310BINDING SITE FOR RESIDUE NI A 201
2AC2SOFTWAREASN A:15BINDING SITE FOR RESIDUE CA A 204
3AC3SOFTWAREASN A:129 , HOH B:204BINDING SITE FOR RESIDUE CA A 205
4AC4SOFTWAREDG B:9 , DG B:10 , HOH B:203BINDING SITE FOR RESIDUE CA B 101
5AC5SOFTWAREDA B:20BINDING SITE FOR RESIDUE CA B 102
6AC6SOFTWAREGLU A:146 , HOH A:305BINDING SITE FOR RESIDUE CA B 103
7AC7SOFTWAREHOH A:315BINDING SITE FOR RESIDUE CA B 104

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HT4)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:114 -Gly A:115

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HT4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HT4)

(-) Exons   (0, 0)

(no "Exon" information available for 4HT4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:194
                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.hhh.hhhhhhhhhhh.eeee....eeee.......eeeee.....hhhhhhhhhhhhhhhhhh.....eeeeeeeee.....hhhhhhhhhhhhhhh.......eeeeee.......eeeeeee.............ee..ee.....hhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ht4 A   2 AmYHFQNKFVSKANGQSATAKSAFNSASRIKDFKENEFKDYSNKQCDYSEILLPNNADDKFKDREYLWNKVHDVENRKNSQVAREIIIGLPNEFDPNSNIELAKEFAESLSNEGmIVDLNIHKINEENPHAHLLCTLRGLDKNNEFEPKRKGNDYIRDWNTKEKHNEWRKRWENVQNKHLEKNGFSVRVSADSY 195
                             |      11        21        31        41        51        61        71        81        91       101       111    |  121       131       141       151       161       171       181       191    
                             |                                                                                                              116-MSE                                                                           
                             3-MSE                                                                                                                                                                                            


Chain B from PDB  Type:DNA  Length:28
                                                            
                 4ht4 B   2 CGCGAACGGAACGTTCGCATAAGTGCGC  29
                                    11        21
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HT4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HT4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HT4)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4HT4)

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  Cis Peptide Bonds
    Glu A:114 - Gly A:115   [ RasMol ]  
 

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