4HPJ - JenaLib

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Title :   CRYSTAL STRUCTURE OF TRYPTOPHAN SYNTHASE AT 1.45 A RESOLUTION IN COMPLEX WITH 2-AMINOPHENOL QUINONOID IN THE BETA SITE AND THE F9 INHIBITOR IN THE ALPHA SITE

Authors :   E. Hilario, D. Niks, M. F. Dunn, L. J. Mueller, L. Fan

Date :   23 Oct 12 (Deposition) - 25 Dec 13 (Release) - 01 Jan 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.45

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A,B  (2x)

Keywords :   Lyase, Carbon-Oxygen Lyase, Tryptophan Biosynthesis, Salmonella, F9F, Allosteric Enzyme, Amino-Acid Biosynthesis, Aromatic Amino Acid Biosynthesis, Pyridoxal Phosphate, Alpha Amino Acrylate, Lyase-Lyase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Niks, E. Hilario, A. Dierkers, H. Ngo, D. Borchardt, T. J. Neubauer, L. Fan, L. J. Mueller, M. F. Dunn
Allostery And Substrate Channeling In The Tryptophan Synthase Bienzyme Complex: Evidence For Two Subunit Conformations And Four Quaternary States.
Biochemistry V. 52 6396 2013
PubMed-ID: 23952479 | Reference-DOI: 10.1021/BI400795E

Molecule 1 - TRYPTOPHAN SYNTHASE ALPHA CHAIN
	Chains	:	A
	EC Number	:	4.2.1.20
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	CB149
	Expression System Taxid	:	562
	Expression System Vector Type	:	DERIVATIVE OF PBR322
	Gene	:	STM1727, TRPA
	Organism Scientific	:	SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM
	Organism Taxid	:	90371

Molecule 2 - TRYPTOPHAN SYNTHASE BETA CHAIN
	Chains	:	B
	EC Number	:	4.2.1.20
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	CB149
	Expression System Taxid	:	562
	Expression System Vector Type	:	DERIVATIVE OF PBR322
	Gene	:	STM1726, TRPB
	Organism Scientific	:	SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM
	Organism Taxid	:	90371

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (6, 16)

No.	Name	Count	Type	Full Name
1	1D0	1	Ligand/Ion	(2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)IMINO]-3-[(2-HYDROXYPHENYL)AMINO]PROPANOIC ACID
2	BCN	1	Ligand/Ion	BICINE
3	CL	7	Ligand/Ion	CHLORIDE ION
4	CS	2	Ligand/Ion	CESIUM ION
5	F9F	1	Ligand/Ion	2-({[4-(TRIFLUOROMETHOXY)PHENYL]SULFONYL}AMINO)ETHYLDIHYDROGEN PHOSPHATE
6	PEG	4	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Biological Unit 1 (4, 7)

No.	Name	Count	Type	Full Name
1	1D0	1	Ligand/Ion	(2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)IMINO]-3-[(2-HYDROXYPHENYL)AMINO]PROPANOIC ACID
2	BCN	1	Ligand/Ion	BICINE
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	CS	-1	Ligand/Ion	CESIUM ION
5	F9F	1	Ligand/Ion	2-({[4-(TRIFLUOROMETHOXY)PHENYL]SULFONYL}AMINO)ETHYLDIHYDROGEN PHOSPHATE
6	PEG	4	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Biological Unit 2 (4, 14)

No.	Name	Count	Type	Full Name
1	1D0	2	Ligand/Ion	(2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)IMINO]-3-[(2-HYDROXYPHENYL)AMINO]PROPANOIC ACID
2	BCN	2	Ligand/Ion	BICINE
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	CS	-1	Ligand/Ion	CESIUM ION
5	F9F	2	Ligand/Ion	2-({[4-(TRIFLUOROMETHOXY)PHENYL]SULFONYL}AMINO)ETHYLDIHYDROGEN PHOSPHATE
6	PEG	8	Ligand/Ion	DI(HYDROXYETHYL)ETHER

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PHE A:22 , GLU A:49 , ALA A:59 , ILE A:64 , LEU A:100 , LEU A:127 , ALA A:129 , ILE A:153 , TYR A:175 , THR A:183 , GLY A:184 , PHE A:212 , GLY A:213 , ILE A:232 , GLY A:234 , SER A:235 , HOH A:411 , HOH A:418 , HOH A:490 , PRO B:18	BINDING SITE FOR RESIDUE F9F A 301
02	AC2	SOFTWARE	HOH A:430 , HOH B:651	BINDING SITE FOR RESIDUE CL A 302
03	AC3	SOFTWARE	HIS B:86 , LYS B:87 , GLU B:109 , THR B:110 , GLY B:111 , ALA B:112 , GLY B:113 , GLN B:114 , HIS B:115 , LEU B:166 , GLY B:189 , THR B:190 , CYS B:230 , GLY B:232 , GLY B:233 , GLY B:234 , SER B:235 , ASN B:236 , GLY B:303 , GLU B:350 , SER B:377 , GLY B:378 , HOH B:525	BINDING SITE FOR RESIDUE 1D0 B 401
04	AC4	SOFTWARE	THR B:248 , VAL B:250 , GLY B:251 , LEU B:252 , GLY B:320 , ARG B:321 , ASP B:323 , HOH B:755 , HOH B:767 , HOH B:824	BINDING SITE FOR RESIDUE BCN B 402
05	AC5	SOFTWARE	THR B:3 , LEU B:4 , LEU B:5 , ASN B:6	BINDING SITE FOR RESIDUE PEG B 403
06	AC6	SOFTWARE	THR B:328 , ASP B:330 , GLU B:331 , HOH B:550 , HOH B:777 , HOH B:786	BINDING SITE FOR RESIDUE PEG B 404
07	AC7	SOFTWARE	PRO B:56 , HOH B:704	BINDING SITE FOR RESIDUE PEG B 405
08	AC8	SOFTWARE	LEU B:217 , ASP B:218 , LYS B:219 , GLU B:220 , GLY B:221 , HOH B:882	BINDING SITE FOR RESIDUE PEG B 406
09	AC9	SOFTWARE	ASN B:6 , HOH B:859	BINDING SITE FOR RESIDUE CL B 407
10	BC1	SOFTWARE	PHE B:9 , HOH B:578 , HOH B:892	BINDING SITE FOR RESIDUE CL B 408
11	BC2	SOFTWARE	HOH A:466 , ILE B:20 , TYR B:181	BINDING SITE FOR RESIDUE CL B 411
12	BC3	SOFTWARE	HOH B:566 , HOH B:810 , HOH B:895	BINDING SITE FOR RESIDUE CL B 412
13	BC4	SOFTWARE	VAL B:231 , GLY B:232 , GLU B:256 , GLY B:268 , LEU B:304 , PHE B:306 , SER B:308	BINDING SITE FOR RESIDUE CS B 413
14	BC5	SOFTWARE	THR B:66 , THR B:69 , THR B:71 , HOH B:875 , HOH B:876	BINDING SITE FOR RESIDUE CS B 414

(no "SS Bond" information available for 4HPJ)

Asymmetric Unit

No.	Residues
1	Asp A:27	-	Pro A:28
2	Arg A:267	-	Ala A:268
3	Arg B:55	-	Pro B:56
4	His B:195	-	Pro B:196

(no "SAP(SNP)/Variant" information available for 4HPJ)

(no "PROSITE Motif" information available for 4HPJ)

(no "Exon" information available for 4HPJ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:268
                                                                                                                                                                                                                                                                                                            
               SCOP domains d4hpja_ A: Trp synthase alpha-subunit                                                                                                                                                                                                                                        SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...eeeeeee....hhhhhhhhhhhhhhh....eeee.........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....eeeeehhhhhhh.hhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh..eee.ee....hhhhhhhhhhhh...eeee...............hhhhhhhhhhh....eeee....hhhhhhhhhhh...eeeehhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hpj A   1 MERYENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEKNLASPKQMLAELRSFVSAMKAASRA 268
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260

Chain B from PDB  Type:PROTEIN  Length:395
                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains d4hpjb_ B: Tryptophan synthase, beta-subunit                                                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee..eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eee.........eeeeeee.hhh.....hhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhhh.eeeeeeehhhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhhh..eee.........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhh.....eeeeeeeee.hhhhh...hhhhhheeeee.eeeeee..............hhhhh....hhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hpj B   2 TTLLNPYFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTVHDILKARGE 396
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 4HPJ)

(no "Pfam Domain" information available for 4HPJ)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Cis Peptide Bonds
		Arg A:267 - Ala A:268	[ RasMol ]
		Arg B:55 - Pro B:56	[ RasMol ]
		Asp A:27 - Pro A:28	[ RasMol ]
		His B:195 - Pro B:196	[ RasMol ]

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	TRPB_SALTY \| P0A2K1
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	4.2.1.20
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3cep	STRUCTURE OF A TRYPTOPHAN SYNTHASE QUINONOID INTERMEDIATE
3pr2	TRYPTOPHAN SYNTHASE INDOLINE QUINONOID STRUCTURE WITH F9 INHIBITOR IN ALPHA SITE
4hn4
4hpx
4ht3

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 16)

Sites (14, 14)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (2, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (12, 21)

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