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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE ZALPHA DOMAIN FROM CYPRINID HERPES VIRUS 3
 
Authors :  A. R. Tome, K. Kus, M. De Rosa, L. M. Paulo, D. Figueiredo, A. Athanasiad
Date :  22 Oct 12  (Deposition) - 11 Sep 13  (Release) - 04 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.76
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Domain Swapping, Z-Dna Binding Domain, Dna And Rna Binding, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. R. Tome, K. Kus, S. Correia, L. M. Paulo, S. Zacarias, M. De Rosa, D. Figueiredo, R. M. Parkhouse, A. Athanasiadis
Crystal Structure Of A Poxvirus-Like Zalpha Domain From Cyprinid Herpesvirus 3
J. Virol. V. 87 3998 2013
PubMed-ID: 23365431  |  Reference-DOI: 10.1128/JVI.03116-12

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: ZALPHA DOMAIN, UNP RESIDUES 216-278
    Gene: KHVJ122, ORF112
    Organism Scientific: CYPRINID HERPESVIRUS 3
    Organism Taxid: 180230

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 9)

Asymmetric Unit (1, 9)
No.NameCountTypeFull Name
1SO49Ligand/IonSULFATE ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
Biological Unit 2 (1, 5)
No.NameCountTypeFull Name
1SO45Ligand/IonSULFATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:268 , PRO A:269 , GLN A:270 , HOH A:419 , HOH A:425 , HOH C:418 , LYS D:237BINDING SITE FOR RESIDUE SO4 A 301
2AC2SOFTWAREARG A:249 , ASN A:253 , TYR A:257 , HOH A:403 , HOH A:439 , LYS B:267 , GLN B:270 , HOH B:443BINDING SITE FOR RESIDUE SO4 A 302
3AC3SOFTWAREHIS B:268 , PRO B:269 , GLN B:270 , HOH B:414 , HOH B:433 , LYS C:237BINDING SITE FOR RESIDUE SO4 B 301
4AC4SOFTWARELYS B:237 , HIS B:240 , HIS C:268BINDING SITE FOR RESIDUE SO4 B 302
5AC5SOFTWAREHOH A:419 , LYS B:237 , HIS C:268 , PRO C:269 , GLN C:270BINDING SITE FOR RESIDUE SO4 C 301
6AC6SOFTWAREARG C:249 , ASN C:253 , TYR C:257 , HOH C:406 , HOH C:464 , TYR D:257 , LYS D:267 , HIS D:271 , PRO D:272BINDING SITE FOR RESIDUE SO4 C 302
7AC7SOFTWARETYR C:257 , LYS C:267 , GLN C:270 , HIS C:271 , PRO C:272 , HOH C:421 , ASN D:253 , TYR D:257 , HOH D:306BINDING SITE FOR RESIDUE SO4 C 303
8AC8SOFTWARESER C:219 , GLU C:220 , GLU C:221 , HOH C:463 , GLU D:221BINDING SITE FOR RESIDUE SO4 C 304
9AC9SOFTWAREGLN B:234 , GLY B:235 , HIS C:268 , TYR D:275 , LEU D:276BINDING SITE FOR RESIDUE SO4 C 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HOB)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1His A:268 -Pro A:269
2His B:268 -Pro B:269
3His C:268 -Pro C:269
4His D:268 -Pro D:269

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HOB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HOB)

(-) Exons   (0, 0)

(no "Exon" information available for 4HOB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:62
                                                                                              
               SCOP domains -------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhhhhhhhh...eee....eee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                 4hob A 217 PISEEMNLKILAYLGTKQGAKAVHIAQSLGAQRSEVNRHLYRMSEDGRVRKHPQHPVWYLPA 278
                                   226       236       246       256       266       276  


Chain B from PDB  Type:PROTEIN  Length:63
                                                                                               
               SCOP domains --------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhhhhhhhh...eee....eee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                 4hob B 215 SNPISEEMNLKILAYLGTKQGAKAVHIAQSLGAQRSEVNRHLYRMSEDGRVRKHPQHPVWYLP 277
                                   224       234       244       254       264       274   


Chain C from PDB  Type:PROTEIN  Length:67
                                                                                                   
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhhhhhhhh...eee....eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 4hob C 212 HMASNPISEEMNLKILAYLGTKQGAKAVHIAQSLGAQRSEVNRHLYRMSEDGRVRKHPQHPVWYLPA 278
                                   221       231       241       251       261       271       


Chain D from PDB  Type:PROTEIN  Length:60
                                                                                            
               SCOP domains ------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhhhhhhhh...eee....eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------ Transcript
                 4hob D 219 SEEMNLKILAYLGTKQGAKAVHIAQSLGAQRSEVNRHLYRMSEDGRVRKHPQHPVWYLPA 278
                                   228       238       248       258       268       278
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HOB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HOB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HOB)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        A4FTK7_9VIRU | A4FTK7: 4wcg

(-) Related Entries Specified in the PDB File

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