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(-) Description

Title :  CRYSTAL STRUCTURE OF FULL-LENGTH TOXASCARIS LEONINA GALECTIN
 
Authors :  M. S. Jeong
Date :  15 Oct 12  (Deposition) - 06 Feb 13  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Carbohydrate Recognition Domain, Galectin, A Regulatory Molecule, The Host Immune System, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. S. Jeong, H. G. Hwang, H. S. Yu, S. B. Jang
Structure Of Full-Length Toxascaris Leonina Galectin With Two Carbohydrate-Recognition Domains.
Acta Crystallogr. , Sect. D V. 69 168 2013
PubMed-ID: 23385453  |  Reference-DOI: 10.1107/S0907444912045106
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GALECTIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: TOXASCARIS LEONINA
    Organism Taxid: 59264

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4HL0)

(-) Sites  (0, 0)

(no "Site" information available for 4HL0)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HL0)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Val A:9 -Pro A:10
2Val A:148 -Pro A:149
3Val B:9 -Pro B:10
4Val B:148 -Pro B:149

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HL0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HL0)

(-) Exons   (0, 0)

(no "Exon" information available for 4HL0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:278
                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4hl0a1 A:1-144 automated matches                                                                                                               d4hl0a2 A:145-278 automated matches                                                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeee.........eeeeeee......eeeeeee..........eeeeeeee....eeeeeeee..ee...eeee........eeeeeee...eeeeee..eeeeeee...hhhhh.eeeeee..eeeeeeee.......eeee.........eeeeeeeee......eeeeeee....eeeeeeeehhhheeeeeeee..ee................eeeeeee...eeeeee..eeeeeee.......eeeeeeee.eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hl0 A   1 MATETNYPVPYRSKLTEPFEPGQTLIIKGKTAEDSVRFTINLHNTSADFSGNDVPLHISVRFDEGKIVFNTFSKGEWGKEERKSNPYKKGDDIDIRIRAHDSKFSISVDQKEVKEYEHRVPLSSVTHFSVDGDILITYIHWGGKYYPVPYESGLAGDGLAPGKSLLIFATPEKKGKRFHINLLKKNGDIALHFNPRFDEKAIVRNSLISGEWGNEEREGKNPLEKGIGCDLEFRNEEYAFQIYVDGERFATYAHRLDPHDINGLQIGGDVEVTGIQMV 278
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270        


Chain B from PDB  Type:PROTEIN  Length:278
                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4hl0b1 B:1-144 automated matches                                                                                                               d4hl0b2 B:145-278 automated matches                                                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeee.........eeeeeee......eeeeeee..........eeeeeeee....eeeeeeee..ee...eeee........eeeeeee...eeeeee..eeeeeee...hhhhh.eeeeee..eeeeeeee.......eeee..........eeeeeeee......eeeeeee....eeeeeeee....eeeeeeee..ee................eeeeeee...eeeeee..eeeeeee.......eeeeeeee.eeeeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hl0 B   1 MATETNYPVPYRSKLTEPFEPGQTLIIKGKTAEDSVRFTINLHNTSADFSGNDVPLHISVRFDEGKIVFNTFSKGEWGKEERKSNPYKKGDDIDIRIRAHDSKFSISVDQKEVKEYEHRVPLSSVTHFSVDGDILITYIHWGGKYYPVPYESGLAGDGLAPGKSLLIFATPEKKGKRFHINLLKKNGDIALHFNPRFDEKAIVRNSLISGEWGNEEREGKNPLEKGIGCDLEFRNEEYAFQIYVDGERFATYAHRLDPHDINGLQIGGDVEVTGIQMV 278
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HL0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HL0)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Val A:148 - Pro A:149   [ RasMol ]  
    Val A:9 - Pro A:10   [ RasMol ]  
    Val B:148 - Pro B:149   [ RasMol ]  
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(-) Related Entries Specified in the PDB File

3nv1 THE C DOMAIN OF HUMAN GALECTIN-9