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(-) Description

Title :  CRYSTAL STRUCTURE OF A CARNITINYL-COA DEHYDRATASE FROM MYCOBACTERIUM THERMORESISTIBILE
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  02 Oct 12  (Deposition) - 10 Oct 12  (Release) - 15 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Ssgcid, Carnitinyl-Coa Dehydratase, Enoyl-Coa Hydratase/Isomerase, Mycobacterium Thermoresistibile, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Baugh, I. Phan, D. W. Begley, M. C. Clifton, B. Armour, D. M. Dranow, B. M. Taylor, M. M. Muruthi, J. Abendroth, J. W. Fairman, D. Fox, S. H. Dieterich, B. L. Staker, A. S. Gardberg, R. Choi, S. N. Hewitt, A. J. Napuli, J. Myers, L. K. Barrett, Y. Zhang, M. Ferrell, E. Mundt, K. Thompkins, N. Tran, S. Lyons-Abbott, A. Abramov, A. Sekar, D. Serbzhinskiy, D. Lorimer, G. W. Buchko, R. Stacy, L. J. Stewart, T. E. Edwards, W. C. Van Voorhis, P. J. Myler
Increasing The Structural Coverage Of Tuberculosis Drug Targets.
Tuberculosis (Edinb) V. 95 142 2015
PubMed-ID: 25613812  |  Reference-DOI: 10.1016/J.TUBE.2014.12.003

(-) Compounds

Molecule 1 - 3-HYDROXYISOBUTYRYL-COA HYDROLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: AVA0421
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: KEK_02971, NODE_1249_LENGTH_5618_COV_9.770559_39
    Organism Scientific: MYCOBACTERIUM THERMORESISTIBILE
    Organism Taxid: 1078020
    Strain: ATCC 19527 / NCTC 10409

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric/Biological Unit (3, 7)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CL1Ligand/IonCHLORIDE ION
3ZN5Ligand/IonZINC ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:46 , HIS A:97 , GLU A:348 , CL A:405BINDING SITE FOR RESIDUE ZN A 400
2AC2SOFTWAREGLU A:61 , HIS A:189 , HOH A:670BINDING SITE FOR RESIDUE ZN A 401
3AC3SOFTWAREHIS A:32 , GLU A:83 , GLU A:229 , HIS A:246BINDING SITE FOR RESIDUE ZN A 402
4AC4SOFTWAREHIS A:75 , ASP A:247BINDING SITE FOR RESIDUE ZN A 403
5AC5SOFTWAREASP A:193 , HOH A:583 , HOH A:690BINDING SITE FOR RESIDUE ZN A 404
6AC6SOFTWAREGLU A:46 , HIS A:97 , ARG A:100 , GLU A:348 , ZN A:400BINDING SITE FOR RESIDUE CL A 405
7AC7SOFTWARETHR A:31 , HIS A:32 , ASP A:69 , ALA A:72 , GLU A:83 , PHE A:87 , HOH A:594BINDING SITE FOR RESIDUE ACT A 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HDT)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Arg A:320 -Pro A:321
2Asp A:340 -Pro A:341

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HDT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HDT)

(-) Exons   (0, 0)

(no "Exon" information available for 4HDT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:340
                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee..eeeeee.hhhhh...hhhhhhhhhhhhhhhhh.....eeeeee..........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh...eeeee..eeehhhhhhhh...eeee....eee.hhhhhh.....hhhhhhhh...hhhhhhhhhh...hhhhhhhh....ee.hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh.......hhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hdt A   5 NEDVLVNVEGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADGAEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPGKLGLHAALTGAPFSGADAIVMGFADHYVPHDKIDEFTRAVIADGVDAALAAHAQEPPASPLAEQRSWIDECYTGDTVADIIAALRAHDAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRVSCASLKSHDLVEGIRAQLVNPKWRPATLAEVTEADVEAYFAPVDPELTFEGE 348
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304      |318       328       338       348
                                                                                                                                                                                                                                                                                                                                            311|                                
                                                                                                                                                                                                                                                                                                                                             316
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HDT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HDT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HDT)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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