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(-) Description

Title :  CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN WITH KETOSTEROID ISOMERASE-LIKE PROTEIN FOLD FROM CATENULISPORA ACIDIPHILA DSM 44928
 
Authors :  E. V. Filippova, G. Minasov, L. Shuvalova, O. Kiryukhina, R. Jedrzejcz A. Joachimiak, W. F. Anderson, Midwest Center For Structural Gen (Mcsg)
Date :  14 Sep 12  (Deposition) - 03 Oct 12  (Release) - 23 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.15
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. V. Filippova, C. H. Luan, S. F. Dunne, O. Kiryukhina, G. Minasov, L. Shuvalova, W. F. Anderson
Structural Characterization Of A Hypothetical Protein: A Potential Agent Involved In Trimethylamine Metabolism In Catenulispora Acidiphila.
J. Struct. Funct. Genom. V. 15 33 2014
PubMed-ID: 24562475  |  Reference-DOI: 10.1007/S10969-014-9176-Z

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG73
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CACI_0382
    Organism Scientific: CATENULISPORA ACIDIPHILA
    Organism Taxid: 479433
    Strain: DSM 44928

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 25)

Asymmetric/Biological Unit (4, 25)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2CD7Ligand/IonCADMIUM ION
3CL7Ligand/IonCHLORIDE ION
4MSE7Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:45 , HIS A:84 , HOH A:333 , HOH A:356 , GLU B:105BINDING SITE FOR RESIDUE CD A 201
02AC2SOFTWARETYR A:114 , CL A:205 , CL A:206 , TYR B:114 , CL B:204BINDING SITE FOR RESIDUE CD A 202
03AC3SOFTWAREHIS A:62 , ACT A:212 , HOH A:401 , HOH A:414 , HOH A:435BINDING SITE FOR RESIDUE CD A 203
04AC4SOFTWAREHIS A:74 , CL A:209 , ACT A:210 , ACT A:211 , HOH A:471 , CL B:205BINDING SITE FOR RESIDUE CD A 204
05AC5SOFTWARETYR A:114 , SER A:115 , CD A:202 , ALA B:36 , TYR B:113 , TYR B:114BINDING SITE FOR RESIDUE CL A 205
06AC6SOFTWARETYR A:114 , LEU A:116 , CD A:202 , TYR B:114 , LEU B:116BINDING SITE FOR RESIDUE CL A 206
07AC7SOFTWAREMSE A:1 , CL A:208 , CD B:203 , HOH B:480BINDING SITE FOR RESIDUE CL A 207
08AC8SOFTWAREMSE A:1 , CL A:207 , HOH A:426 , CD B:203BINDING SITE FOR RESIDUE CL A 208
09AC9SOFTWARECD A:204 , ACT A:211 , CL B:205BINDING SITE FOR RESIDUE CL A 209
10BC1SOFTWAREHIS A:74 , CD A:204 , ACT A:211 , HOH A:471 , LYS B:67 , CL B:205BINDING SITE FOR RESIDUE ACT A 210
11BC2SOFTWAREASP A:73 , HIS A:74 , CD A:204 , CL A:209 , ACT A:210BINDING SITE FOR RESIDUE ACT A 211
12BC3SOFTWAREHIS A:62 , CD A:203 , HOH A:329 , HOH A:401 , HOH A:412 , HOH A:417 , HOH A:436BINDING SITE FOR RESIDUE ACT A 212
13BC4SOFTWAREHIS B:62 , ACT B:206 , HOH B:377 , HOH B:453 , HOH B:454BINDING SITE FOR RESIDUE CD B 201
14BC5SOFTWAREGLU A:105 , HOH A:440 , HOH A:459 , GLU B:45 , HIS B:84BINDING SITE FOR RESIDUE CD B 202
15BC6SOFTWARECL A:207 , CL A:208 , HOH A:426 , HIS B:74 , HOH B:430 , HOH B:480BINDING SITE FOR RESIDUE CD B 203
16BC7SOFTWAREALA A:36 , TYR A:114 , CD A:202 , TYR B:114 , SER B:115BINDING SITE FOR RESIDUE CL B 204
17BC8SOFTWARECD A:204 , CL A:209 , ACT A:210BINDING SITE FOR RESIDUE CL B 205
18BC9SOFTWAREHIS B:62 , ALA B:93 , CD B:201 , HOH B:329 , HOH B:377 , HOH B:414 , HOH B:466 , HOH B:476BINDING SITE FOR RESIDUE ACT B 206

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4H3U)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4H3U)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4H3U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4H3U)

(-) Exons   (0, 0)

(no "Exon" information available for 4H3U)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh.hhhhhhh.eeeeeeeee....eeeehhhhhhhhhhhhhhheeeeeeeeeeeeee..eeeeeeeeeeee......eeeeeeeeeeee..eeeeeeeeehhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h3u A   1 mTTPEIVTAWAAAWTGTNPNALGTLFAADGTYVDHAIGATmTGREQISGWKARTDAmIENVHVTITKAYRAGDHVTIEAVYGGHIKGAPTPFAVPmATLLRTRGEEITSDQDYYSLSSVLAQSGLPADWTP 131
                            |       10        20        30        40|       50      | 60        70        80        90     | 100       110       120       130 
                            |                                      41-MSE          57-MSE                                 96-MSE                               
                            1-MSE                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh.hhhhhhh.eeeeeeeee....eeeehhhhhhhhhhhhhhheeeeeeeeeeeeee..eeeeeeeeeeee......eeeeeeeeeeee..eeeeeeeeehhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h3u B   2 TTPEIVTAWAAAWTGTNPNALGTLFAADGTYVDHAIGATmTGREQISGWKARTDAmIENVHVTITKAYRAGDHVTIEAVYGGHIKGAPTPFAVPmATLLRTRGEEITSDQDYYSLSSVLAQSGLPADWTP 131
                                    11        21        31        41        51     |  61        71        81        91    |  101       111       121       131
                                                                  41-MSE          57-MSE                                 96-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4H3U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4H3U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4H3U)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4H3U)

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  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4h3u)
 

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        C7PVH9_CATAD | C7PVH9: 4hvn

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