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(-) Description

Title :  TETX DERIVATIZED WITH XENON
 
Authors :  G. Volkers, G. J. Palm, S. Panjikar, W. Hinrichs
Date :  29 Aug 12  (Deposition) - 10 Apr 13  (Release) - 12 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.73
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Rossmann Fold, Monooxygenase, Xenon, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Volkers, J. M. Damas, G. J. Palm, S. Panjikar, C. M. Soares, W. Hinrichs
Putative Dioxygen-Binding Sites And Recognition Of Tigecycline And Minocycline In The Tetracycline-Degrading Monooxygenase Tetx.
Acta Crystallogr. , Sect. D V. 69 1758 2013
PubMed-ID: 23999299  |  Reference-DOI: 10.1107/S0907444913013802

(-) Compounds

Molecule 1 - TETX2 PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 11-388
    Gene: TETX2
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON
    Organism Taxid: 818

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 23)

Asymmetric Unit (3, 23)
No.NameCountTypeFull Name
1FAD4Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2SO411Ligand/IonSULFATE ION
3XE8Ligand/IonXENON
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2SO42Ligand/IonSULFATE ION
3XE-1Ligand/IonXENON
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2SO43Ligand/IonSULFATE ION
3XE-1Ligand/IonXENON
Biological Unit 3 (2, 4)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2SO43Ligand/IonSULFATE ION
3XE-1Ligand/IonXENON
Biological Unit 4 (2, 4)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2SO43Ligand/IonSULFATE ION
3XE-1Ligand/IonXENON

(-) Sites  (23, 23)

Asymmetric Unit (23, 23)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:23 , GLY A:24 , GLY A:25 , PRO A:26 , VAL A:27 , TYR A:45 , GLU A:46 , ARG A:47 , ASP A:48 , LEU A:60 , ARG A:117 , ARG A:121 , ARG A:137 , LYS A:138 , LEU A:139 , ALA A:167 , ASN A:168 , GLY A:169 , GLN A:192 , GLY A:310 , ASP A:311 , PRO A:318 , GLN A:322 , GLY A:323 , VAL A:324 , HOH A:506BINDING SITE FOR RESIDUE FAD A 401
02AC2SOFTWAREARG A:137 , LYS A:156BINDING SITE FOR RESIDUE SO4 A 402
03AC3SOFTWARELYS A:138 , LYS A:173BINDING SITE FOR RESIDUE SO4 A 403
04AC4SOFTWAREILE A:237 , PHE A:267 , TYR A:274BINDING SITE FOR RESIDUE XE A 404
05AC5SOFTWAREASN A:221 , PHE A:239 , GLU A:266BINDING SITE FOR RESIDUE XE A 405
06AC6SOFTWAREGLY B:23 , GLY B:25 , PRO B:26 , VAL B:27 , TYR B:45 , GLU B:46 , ARG B:47 , ASP B:48 , LEU B:60 , ARG B:117 , ARG B:121 , ARG B:137 , LYS B:138 , LEU B:139 , ALA B:167 , ASN B:168 , GLY B:169 , GLN B:192 , LEU B:287 , GLY B:310 , ASP B:311 , PRO B:318 , GLN B:322 , GLY B:323 , VAL B:324 , HOH B:506BINDING SITE FOR RESIDUE FAD B 401
07AC7SOFTWAREARG B:54BINDING SITE FOR RESIDUE SO4 B 402
08AC8SOFTWAREARG B:137 , LYS B:156BINDING SITE FOR RESIDUE SO4 B 403
09AC9SOFTWAREARG B:47 , LYS B:138BINDING SITE FOR RESIDUE SO4 B 404
10BC1SOFTWARELEU B:223 , ILE B:237 , PHE B:267 , TYR B:274 , ILE B:278BINDING SITE FOR RESIDUE XE B 405
11BC2SOFTWAREASN B:221 , PHE B:239 , GLU B:266BINDING SITE FOR RESIDUE XE B 406
12BC3SOFTWAREGLY C:23 , GLY C:25 , PRO C:26 , VAL C:27 , TYR C:45 , GLU C:46 , ARG C:47 , ASP C:48 , LEU C:60 , ARG C:117 , ARG C:121 , ARG C:137 , LYS C:138 , LEU C:139 , ALA C:167 , ASN C:168 , GLY C:169 , LEU C:287 , GLY C:310 , ASP C:311 , PRO C:318 , GLN C:322 , GLY C:323 , VAL C:324BINDING SITE FOR RESIDUE FAD C 401
13BC4SOFTWAREGLU C:52 , ALA C:53 , ARG C:54BINDING SITE FOR RESIDUE SO4 C 402
14BC5SOFTWAREARG C:137 , LYS C:156BINDING SITE FOR RESIDUE SO4 C 403
15BC6SOFTWARELYS C:138BINDING SITE FOR RESIDUE SO4 C 404
16BC7SOFTWAREILE C:237 , PHE C:267 , TYR C:274BINDING SITE FOR RESIDUE XE C 405
17BC8SOFTWAREPHE C:239 , GLU C:266 , PHE C:267BINDING SITE FOR RESIDUE XE C 406
18BC9SOFTWAREGLY D:23 , GLY D:25 , PRO D:26 , VAL D:27 , TYR D:45 , GLU D:46 , ARG D:47 , ASP D:48 , LEU D:60 , ARG D:117 , ARG D:121 , ARG D:137 , LYS D:138 , LEU D:139 , ALA D:167 , ASN D:168 , GLY D:169 , GLN D:192 , LEU D:287 , GLY D:310 , ASP D:311 , PRO D:318 , GLN D:322 , GLY D:323 , VAL D:324BINDING SITE FOR RESIDUE FAD D 401
19CC1SOFTWAREARG D:54BINDING SITE FOR RESIDUE SO4 D 402
20CC2SOFTWAREARG D:137 , LYS D:156BINDING SITE FOR RESIDUE SO4 D 403
21CC3SOFTWAREARG D:47 , HOH D:511BINDING SITE FOR RESIDUE SO4 D 404
22CC4SOFTWARELEU D:223 , ILE D:237 , PHE D:267BINDING SITE FOR RESIDUE XE D 405
23CC5SOFTWAREASN D:221 , PHE D:239 , GLU D:266 , PHE D:267BINDING SITE FOR RESIDUE XE D 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GUV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4GUV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GUV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GUV)

(-) Exons   (0, 0)

(no "Exon" information available for 4GUV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee..hhhhhhhhhhhhh...eeeee..............ee....hhhhhhhhh.hhhhhhhhh....eeee.....eeeee...........eehhhhhhhhhhhhh....ee....eeeeee....eeeee..eeeeee.eeee.................eeeeeeeeeeee.hhhhhhhhhhhhhh..eeeeee..eeeeeeeee..eeeeeeeee..........hhhhhhhhhhhhh...hhhhhhhhhhh...eeeeeee..............eeehhhhhhh.......hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4guv A  12 NLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRKFVTDTEVEETGTFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWQVDFQNRNSVVDFLLKEFSDWDERYKELIHTTLSFVGLATRIFPLEKPWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIYGKEAQEESTQNEIEMFKPDFTF 382
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241   ||  255       265       275       285       295       305       315       325       335       345       355       365       375       
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Chain B from PDB  Type:PROTEIN  Length:368
                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee..hhhhhhhhhhhhh....eeee..............ee....hhhhhhhhh.hhhhhhhhh....eeee.....eeeee...........eehhhhhhhhhhhhh....ee....eeeeee....eeeee..eeeeee.eeee.................eeeeeeeeeeee.hhhhhhhhhhhhhh..eeeeee..eeeeeeeee..eeeeeeeee...........hhhhhhhhhhhhh...hhhhhhhhhhh...eeeeeee..............eee.hhhhhh.......hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4guv B  12 NLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRKFVTDTEVEETGTFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWTQVDFQNRNSVVDFLLKEFSDWDERYKELIHTTLSFVGLATRIFPLEKPWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIYGKEAQEESTQNEIEMFKPDFTF 382
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241   ||  254       264       274       284       294       304       314       324       334       344       354       364       374        
                                                                                                                                                                                                                                                                   245|                                                                                                                                     
                                                                                                                                                                                                                                                                    249                                                                                                                                     


Chain C from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee..hhhhhhhhhhhhh....eeee..............ee....hhhhhhhhh.hhhhhhhhh....eeee.....eeeee...........eehhhhhhhhhhhhh....ee....eeeeee....eeeee..eeeeee.eeee.................eeeeeeeeeeeeehhhhhhhhhhhhhh..eeeeee..eeeeeeeee..eeeeeeeee..........hhhhhhhhhhhhh...hhhhhhhhhhh...eeeeeee..............eeehhhhhhh.......hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4guv C  12 NLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRKFVTDTEVEETGTFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWQVDFQNRNSVVDFLLKEFSDWDERYKELIHTTLSFVGLATRIFPLEKPWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIYGKEAQEESTQNEIEMFKPDFTF 382
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241   ||  255       265       275       285       295       305       315       325       335       345       355       365       375       
                                                                                                                                                                                                                                                                   245|                                                                                                                                    
                                                                                                                                                                                                                                                                    250                                                                                                                                    


Chain D from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee..hhhhhhhhhhhhh....eeee..............ee....hhhhhhhhhhhhhhhhhhh....eeee.....eeeee...........eehhhhhhhhhhhhh....ee....eeeeee....eeeee..eeeeee.eeee.................eeeeeeeeeeeeehhhhhhhhhhhhhh..eeeeee..eeeeeeeee..eeeeeeeee..........hhhhhhhhhhhhh...hhhhhhhhhhh...eeeeeee..............eee.hhhhhh.......hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4guv D  12 NLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSKVRKFVTDTEVEETGTFNIQADIHQPEINCPGFFQLCNGNRLMASHQGNLLFANPNNNGALHFGISFKTPDEWQVDFQNRNSVVDFLLKEFSDWDERYKELIHTTLSFVGLATRIFPLEKPWKSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMFIYGKEAQEESTQNEIEMFKPDFTF 382
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241   ||  255       265       275       285       295       305       315       325       335       345       355       365       375       
                                                                                                                                                                                                                                                                   245|                                                                                                                                    
                                                                                                                                                                                                                                                                    250
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

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(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GUV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GUV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GUV)

(-) Gene Ontology  (4, 4)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q93L51_BACT4 | Q93L51: 2xdo 2xyo 2y6q 2y6r 3p9u 3v3n 3v3o 4a6n 4a99

(-) Related Entries Specified in the PDB File

2xdo 2xyo 2y6q 2y6r