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(-) Description

Title :  STRUCTURE OF UNLIGANDED, INACTIVE ROR2 KINASE DOMAIN
 
Authors :  J. M. Mendrola, M. A. Lemmon
Date :  28 Aug 12  (Deposition) - 26 Sep 12  (Release) - 21 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.41
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Atp Binding, Phosphorylation, Membrane, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. C. Artim, J. M. Mendrola, M. A. Lemmon
Assessing The Range Of Kinase Autoinhibition Mechanisms In The Insulin Receptor Family.
Biochem. J. V. 448 213 2012
PubMed-ID: 22992069  |  Reference-DOI: 10.1042/BJ20121365

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE TRANSMEMBRANE RECEPTOR ROR2
    Chains: A, B
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Plasmid: PFASTBAC1
    Expression System Strain: SF9
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: TYROSINE KINASE DOMAIN (UNP RESIDUES 452-753)
    Gene: NTRKR2, ROR2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NEUROTROPHIC TYROSINE KINASE, RECEPTOR-RELATED 2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1NO34Ligand/IonNITRATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1NO32Ligand/IonNITRATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1NO32Ligand/IonNITRATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:607 , ARG A:735 , ARG A:738 , PHE A:739 , LYS A:740 , HOH A:946BINDING SITE FOR RESIDUE NO3 A 801
2AC2SOFTWAREPHE A:592 , TYR A:688 , ASP A:716 , HOH A:916 , HOH A:1009BINDING SITE FOR RESIDUE NO3 A 802
3AC3SOFTWARESER B:557 , HIS B:558 , TYR B:624 , ASP B:625BINDING SITE FOR RESIDUE NO3 B 801
4AC4SOFTWAREPHE B:592 , PHE B:686 , TYR B:688 , ASP B:716 , HOH B:994BINDING SITE FOR RESIDUE NO3 B 802

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:694 -A:694
2B:694 -B:694

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Gln A:547 -Pro A:548
2Trp A:749 -Gly A:750
3Gln B:547 -Pro B:548

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GT4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GT4)

(-) Exons   (0, 0)

(no "Exon" information available for 4GT4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:274
                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4gt4a_ A: automated matches                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhh.eeeeeeeee....eeeeeee..eeeeeee.....h.hhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhh..........ee...hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.hhh.eee......hhhhhhhh.........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gt4 A 464 KLKEISLSAVRFMEELGEDRFGKVYKGHLFTQAVAIKTLKDAEGLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWGN 751
                                   473       483       493|      510|| ||  522       532       542       552       562       572  ||   587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747    
                                                       493|       511| ||                                                       575|                                                                                                                                                                          
                                                        501        513 ||                                                        581                                                                                                                                                                          
                                                                     515|                                                                                                                                                                                                                                     
                                                                      517                                                                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:273
                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4gt4b_ B: automated matches                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhh.eeeeeeeeee..eeeeeeee...eeeeee.......hhhhhhhhhhhhhh........eeeee......eeeee.....hhhhhhhh............hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.hhh.eee......hhhhhhhh.........hhhhhhhhhhhhheehhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gt4 B 464 KLKEISLSAVRFMEELGEDRFGKVYKGHLFTQAVAIKTLKDKAEPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNRQVLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWGNL 752
                                   473       483       493|      510   ||  521       531       541       551       561       571||     589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749   
                                                       493|          514|                                                     572|                                                                                                                                                                           
                                                        501           516                                                      581
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GT4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GT4)

(-) Gene Ontology  (45, 45)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  ROR2_HUMAN | Q01974
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  2.7.10.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ROR2_HUMAN | Q01974: 3zzw

(-) Related Entries Specified in the PDB File

4gt5