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(-) Description

Title :  CRYSTAL STRUCTURE OF FULL LENGTH TRANSCRIPTION REPRESSOR LSRR FROM E. COLI.
 
Authors :  M. Wu, Y. Tao, X. Liu, J. Zang
Date :  17 Aug 12  (Deposition) - 24 Apr 13  (Release) - 19 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Hth Motif, Sorc/Deor Family, Transcription Repressor, P-Ai-2, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Wu, Y. Tao, X. Liu, J. Zang
Structural Basis For Phosphorylated Autoinducer-2 Modulatio Of The Oligomerization State Of The Global Transcription Regulator Lsrr From Escherichia Coli
J. Biol. Chem. V. 288 15878 2013
PubMed-ID: 23589368  |  Reference-DOI: 10.1074/JBC.M112.417634

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL REGULATOR LSRR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: ROSETTA2 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: B1512, JW1505, LSRR, YDEW
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:124 , GLY A:209 , ASP A:243 , ILE A:244 , LEU A:245BINDING SITE FOR RESIDUE GOL A 401
2AC2SOFTWAREGLY B:209 , ASP B:243 , LEU B:245BINDING SITE FOR RESIDUE GOL B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GO1)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gln A:11 -Gly A:12

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GO1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GO1)

(-) Exons   (0, 0)

(no "Exon" information available for 4GO1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:297
                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh....hhhhhhhhh..hhhhhhhhhhhhhhh..eeeee......hhhhhhhhhhhhh..eeeee......hhhhhhhhhhhhhhhh......eeee..hhhhhhhhhhhhhhhhhh..eeee.......hhhhhh.......ee.........hhhhhhhhhhhhhhhhhhhhhhh..eeee..ee..hhhhhhhhhh...eee..eee..........hhhhh....hhhhhh...eeeee.....hhhhhhhhhhhh...eeeeehhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4go1 A  10 EQGMCEEEQVARIAWFYYHDGLTQSEISDRLGLTRLKVSRLLEKGHQSGIIRVQINSRFEGCLEYETQLRRQFSLQHVRVIPGLADADVGGRLGIGAAHMLMSLLQPQQMLAIGFGEATMNTLQRLSGFISSQQIRLVTLSGGVGSYMTGIGQLNAACSVNIIPAPLRASSADIARTLKNENCVKDVLLAAQAADVAIVGIGAVSQGEQLMIGRKGAVGDILGYFFDAKGDVVTNIKIHNELIGLPLSALKTIPVRVGVAGGENKAEAIAAAMKGGYINALVTDQDTAAAILRSLEH 320
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209   ||  233       243       253       263       273       283       293       303       313       
                                                                                                                                                                                                                                     213|                                                                                            
                                                                                                                                                                                                                                      228                                                                                            


Chain B from PDB  Type:PROTEIN  Length:296
                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhhhhh.eeee....hhhhh...........ee.........hhhhhhhhhhhhhhhhhhhhhhh..eeeee.ee....hhhhhhhhhhh...eee..eee..........hhhhhh...hhhhhhh..eeeee..hhhhhhhhhhhhhh....eeeeehhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4go1 B  12 GMCEEEQVARIAWFYYHDGLTQSEISDRLGLTRLKVSRLLEKGHQSGIIRVQINSRFEGCLEYETQLRRQFSLQHVRVIPGLADADVGGRLGIGAAHMLMSLLQPQQMLAIGFGEATMNTLQRLSGFISSQQIRLVTLSGGVGSYMTGIGQLNAACSVNIIPAPLRASSADIARTLKNENCVKDVLLAAQAADVAIVGIGAVGYISQGEQLMIGRKGAVGDILGYFFDAKGDVVTNIKIHNELIGLPLSALKTIPVRVGVAGGENKAEAIAAAMKGGYINALVTDQDTAAAILRSL 318
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211 ||    232       242       252       262       272       282       292       302       312      
                                                                                                                                                                                                                                   213|                                                                                             
                                                                                                                                                                                                                                    225
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GO1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GO1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GO1)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        LSRR_ECOLI | P76141: 4l4y 4l4z 4l50 4l51 4l5i 4l5j

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4GO1)